RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TMEM127O75204 238 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 GNSP15586 552 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 BMP8BP34820 402 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 TRAM1Q15629 374 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 UPP1Q16831 310 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 SV2CQ496J9 727 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 BCL2L15Q5TBC7 163 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 TCEAL6Q6IPX3 200 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 BMP8AQ7Z5Y6 402 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 NAA40Q86UY6 237 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 GHDCQ8N2G8 530 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 CREB3L4Q8TEY5 395 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 MISP3Q96FF7 219 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 ERMAPQ96PL5 475 aaPredicted RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 TSNAXQ99598 290 aaKnown RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 BARHL1Q9BZE3 327 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 CD244Q9BZW8 370 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 MARK1Q9P0L2 795 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 ZMYM5Q9UJ78 669 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 Q9Y3F1 56 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 PLXNA3P51805 1871 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 DOCK4Q8N1I0 1966 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 ZCWPW2A0A1B0GU75 182 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 SYNDIG1LA6NDD5 238 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 WASH3PC4AMC7 463 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 M0R082 166 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 SDHDO14521 159 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 MITFO75030 526 aaPredicted RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 STX11O75558 287 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 IGLV3-25P01717 112 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 SERPINF2P08697 491 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 MLNP12872 115 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 GSK3BP49841 420 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 KCNQ1P51787 676 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 CTSCP53634 463 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 RAB5BP61020 215 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 IRF9Q00978 393 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 MXD1Q05195 221 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 CHRNB3Q05901 458 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 ATP13A5Q4VNC0 1218 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 USP30Q70CQ3 517 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 DNAJC5GQ8N7S2 189 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 SCRN2Q96FV2 425 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 MRGPRX2Q96LB1 330 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 ADAT1Q9BUB4 502 aaKnown RBP10.37□□□□□ -0.75
CLK3-226ENST00000569406 CNPPD1Q9BV87 410 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 SUCNR1Q9BXA5 334 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 ULBP1Q9BZM6 244 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 ATXN3LQ9H3M9 355 aa10.37□□□□□ -0.75
CLK3-226ENST00000569406 OR6C68A6NDL8 312 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 ARL5CA6NH57 179 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 G3V2L1 256 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 M0QYT0 321 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 PRAMEF1O95521 474 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 CST1P01037 141 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 SYPP08247 313 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 NMBP08949 121 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 FGF2P09038 288 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 ITGAMP11215 1152 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 PTPN3P26045 913 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 CNTFP26441 200 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 MAGEA2P43356 314 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 FABP9Q0Z7S8 132 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 CRHR2Q13324 411 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 BICRALQ6AI39 1079 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 DLEU7Q6UYE1 221 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 TMEM151AQ8N4L1 468 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 PLA2G15Q8NCC3 412 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 MOSPD2Q8NHP6 518 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 ISL2Q96A47 359 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 NSMCE2Q96MF7 247 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 TMEM209Q96SK2 561 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 FTHL17Q9BXU8 183 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 GAREM1Q9H706 876 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 NMRAL1Q9HBL8 299 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 FBXW11Q9UKB1 542 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 ST3GAL5Q9UNP4 418 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 MYO16Q9Y6X6 1858 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 C17orf102A2RUQ5 167 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 C1orf196B1AJZ1 125 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 PEX11BO96011 259 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 TIMP2P16035 220 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 RAB2AP61019 212 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.36□□□□□ -0.75
CLK3-226ENST00000569406 TIGD5Q53EQ6 642 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 MLIPQ5VWP3 458 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 ZNF57Q68EA5 555 aaPredicted RBP10.36□□□□□ -0.75
CLK3-226ENST00000569406 LAIR1Q6GTX8 287 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 NADSYN1Q6IA69 706 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 FAM109BQ6ICB4 259 aaPredicted RBP10.36□□□□□ -0.75
CLK3-226ENST00000569406 ARRDC1Q8N5I2 433 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 CDYL2Q8N8U2 506 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 ZNF383Q8NA42 475 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 OR2L5Q8NG80 312 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 ZDHHC1Q8WTX9 485 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 OTULINQ96BN8 352 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 PHF21BQ96EK2 531 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 XKR8Q9H6D3 395 aa10.36□□□□□ -0.75
CLK3-226ENST00000569406 RBFOX1Q9NWB1 397 aaKnown RBP10.36□□□□□ -0.75
CLK3-226ENST00000569406 WWOXQ9NZC7 414 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms