RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MANSC1Q9H8J5 431 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 LRTM1Q9HBL6 345 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 ZBTB20Q9HC78 741 aaPredicted RBP18.29■□□□□ 0.52
CLN3-225ENST00000566824 ZNF71Q9NQZ8 489 aaPredicted RBP18.29■□□□□ 0.52
CLN3-225ENST00000566824 RIC8BQ9NVN3 520 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 CES1P1Q9UKY3 287 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 TP53TG5Q9Y2B4 290 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 PCDHA9Q9Y5H5 950 aa18.29■□□□□ 0.52
CLN3-225ENST00000566824 NPIPB8E9PQR5 432 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 RGS14O43566 566 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 ANXA4P09525 319 aaPredicted RBP18.28■□□□□ 0.52
CLN3-225ENST00000566824 BUD31P41223 144 aaPredicted RBP18.28■□□□□ 0.52
CLN3-225ENST00000566824 SOX8P57073 446 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 SLC26A5P58743 744 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 OCRLQ01968 901 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 STX4Q12846 297 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 PDCD2Q16342 344 aaPredicted RBP18.28■□□□□ 0.52
CLN3-225ENST00000566824 GALNTL6Q49A17 601 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 SOWAHCQ53LP3 525 aaPredicted RBP18.28■□□□□ 0.52
CLN3-225ENST00000566824 NOXRED1Q6NXP6 359 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 FAM180BQ6P0A1 224 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 KIF2BQ8N4N8 673 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 PTPMT1Q8WUK0 201 aaPredicted RBP18.28■□□□□ 0.52
CLN3-225ENST00000566824 TANKQ92844 425 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 ZNF552Q9H707 407 aaPredicted RBP18.28■□□□□ 0.52
CLN3-225ENST00000566824 C1orf109Q9NX04 203 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 GPR83Q9NYM4 423 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 EXO1Q9UQ84 846 aaKnown RBP18.28■□□□□ 0.52
CLN3-225ENST00000566824 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.28■□□□□ 0.52
CLN3-225ENST00000566824 CPAMD8Q8IZJ3 1885 aa18.28■□□□□ 0.52
CLN3-225ENST00000566824 CNTRLQ7Z7A1 2325 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 GNG14A0A1W2PPG7 69 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 SAGE2PA6NJ88 616 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 MYO1DO94832 1006 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 GPR75O95800 540 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 PRB1P04280 392 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 SERPINA7P05543 415 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 TLX1P31314 330 aaPredicted RBP18.27■□□□□ 0.52
CLN3-225ENST00000566824 PTGER1P34995 402 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 RPL14P50914 215 aaKnown RBP18.27■□□□□ 0.52
CLN3-225ENST00000566824 DUSP2Q05923 314 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 MYBPC3Q14896 1274 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 BTBD16Q32M84 506 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 KBTBD2Q8IY47 623 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 ZNF321PQ8N8H1 164 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLN3-225ENST00000566824 BRIX1Q8TDN6 353 aaKnown RBP18.27■□□□□ 0.52
CLN3-225ENST00000566824 WBP1Q96G27 269 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 EGLN2Q96KS0 407 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 FCRL1Q96LA6 429 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 LPAR4Q99677 370 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 SLC25A23Q9BV35 468 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 VTI1BQ9UEU0 232 aa18.27■□□□□ 0.52
CLN3-225ENST00000566824 BLACEA4D250 179 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 MKRN2OSH3BPM6 223 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 HRKO00198 91 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 PEX11AO75192 247 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 IFNA16P05015 189 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 ALDH9A1P49189 494 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 HK2P52789 917 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 TRA2BP62995 288 aaKnown RBP18.26■□□□□ 0.51
CLN3-225ENST00000566824 RPL38P63173 70 aaKnown RBP18.26■□□□□ 0.51
CLN3-225ENST00000566824 COLEC12Q5KU26 742 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 B3GNTL1Q67FW5 361 aaPredicted RBP18.26■□□□□ 0.51
CLN3-225ENST00000566824 PLAG1Q6DJT9 500 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 OR52E8Q6IFG1 317 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 SLC48A1Q6P1K1 146 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 SIRT6Q8N6T7 355 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 CDC26Q8NHZ8 85 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 C9orf43Q8TAL5 461 aaPredicted RBP18.26■□□□□ 0.51
CLN3-225ENST00000566824 RAB3IL1Q8TBN0 382 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 C19orf60Q96EN9 201 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 VPS50Q96JG6 964 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 LHPPQ9H008 270 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 ADNPQ9H2P0 1102 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 ACBD3Q9H3P7 528 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 THAP1Q9NVV9 213 aa18.26■□□□□ 0.51
CLN3-225ENST00000566824 MARCOQ9UEW3 520 aaPredicted RBP18.26■□□□□ 0.51
CLN3-225ENST00000566824 ZNF223Q9UK11 482 aaPredicted RBP18.26■□□□□ 0.51
CLN3-225ENST00000566824 BSNQ9UPA5 3926 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 MAN1A2O60476 641 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 SDC1P18827 310 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 STT3AP46977 705 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 ST13P50502 369 aaKnown RBP18.25■□□□□ 0.51
CLN3-225ENST00000566824 GPR143P51810 404 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 C6orf136Q5SQH8 315 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 ATG16L1Q676U5 607 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 FCRLBQ6BAA4 426 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 M1APQ8TC57 530 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 NPAS2Q99743 824 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 WDR41Q9HAD4 459 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 ADAP2Q9NPF8 381 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 BAIAP2L1Q9UHR4 511 aa18.25■□□□□ 0.51
CLN3-225ENST00000566824 PCDHGA9Q9Y5G4 932 aaKnown RBP18.25■□□□□ 0.51
CLN3-225ENST00000566824 SMG1Q96Q15 3661 aaKnown RBP18.24■□□□□ 0.51
CLN3-225ENST00000566824 C1orf226A1L170 272 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 KLF11O14901 512 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 DDAH2O95865 285 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 KITP10721 976 aa18.24■□□□□ 0.51
CLN3-225ENST00000566824 ALOX15P16050 662 aaPredicted RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms