RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 PRTFDC1Q9NRG1 225 aa12.08□□□□□ -0.48
CLK3-214ENST00000564096 C5AR2Q9P296 337 aa12.08□□□□□ -0.48
CLK3-214ENST00000564096 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.08□□□□□ -0.48
CLK3-214ENST00000564096 GPN3Q9UHW5 284 aaPredicted RBP12.08□□□□□ -0.48
CLK3-214ENST00000564096 CROTQ9UKG9 612 aa12.08□□□□□ -0.48
CLK3-214ENST00000564096 NXT1Q9UKK6 140 aaKnown RBP12.08□□□□□ -0.48
CLK3-214ENST00000564096 VPS4AQ9UN37 437 aa12.08□□□□□ -0.48
CLK3-214ENST00000564096 EXO1Q9UQ84 846 aaKnown RBP12.08□□□□□ -0.48
CLK3-214ENST00000564096 PCDHGA3Q9Y5H0 932 aa12.08□□□□□ -0.48
CLK3-214ENST00000564096 PIEZO1Q92508 2521 aa12.08□□□□□ -0.48
CLK3-214ENST00000564096 ASPDHA6ND91 283 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 TM4SF5O14894 197 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 KCNK5O95279 499 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 NTRK1P04629 796 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 ITIH1P19827 911 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 PPIBP23284 216 aaKnown RBP12.07□□□□□ -0.48
CLK3-214ENST00000564096 MPIP34949 423 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 GPC1P35052 558 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 RORAP35398 523 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 SOAT1P35610 550 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 MANFP55145 182 aaKnown RBP12.07□□□□□ -0.48
CLK3-214ENST00000564096 CLDN6P56747 220 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 STX4Q12846 297 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 BIKQ13323 160 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 SERTAD2Q14140 314 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 MLC1Q15049 377 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 TLR1Q15399 786 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 MFSD4BQ5TF39 518 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 RETREG3Q86VR2 466 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 ANKRD46Q86W74 232 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 COL27A1Q8IZC6 1860 aaPredicted RBP12.07□□□□□ -0.48
CLK3-214ENST00000564096 DTWD1Q8N5C7 304 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 DNAJB14Q8TBM8 379 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 ADAMTS14Q8WXS8 1223 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 OR5P2Q8WZ92 322 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 GTF2H4Q92759 462 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 CIDECQ96AQ7 238 aaPredicted RBP12.07□□□□□ -0.48
CLK3-214ENST00000564096 SH3GL1Q99961 368 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 HOPXQ9BPY8 73 aaPredicted RBP12.07□□□□□ -0.48
CLK3-214ENST00000564096 BTBD10Q9BSF8 475 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 B3GNT4Q9C0J1 378 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 SEMA3GQ9NS98 782 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 IFT80Q9P2H3 777 aaPredicted RBP12.07□□□□□ -0.48
CLK3-214ENST00000564096 PRPF19Q9UMS4 504 aaKnown RBP12.07□□□□□ -0.48
CLK3-214ENST00000564096 SATB2Q9UPW6 733 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 CORO2BQ9UQ03 480 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 AP3M1Q9Y2T2 418 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 UNC13CQ8NB66 2214 aa12.07□□□□□ -0.48
CLK3-214ENST00000564096 MEN1O00255 615 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 PGRMC2O15173 223 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 OR10H2O60403 315 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 B4GALT2O60909 372 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 CDC123O75794 336 aaPredicted RBP12.06□□□□□ -0.48
CLK3-214ENST00000564096 CPSF4O95639 269 aaKnown RBP12.06□□□□□ -0.48
CLK3-214ENST00000564096 GPR75O95800 540 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 C6orf47O95873 294 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 ALBP02768 609 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 ABCB1P08183 1280 aaPredicted RBP12.06□□□□□ -0.48
CLK3-214ENST00000564096 CYC1P08574 325 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 CD63P08962 238 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 ITGAXP20702 1163 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 FRKP42685 505 aaPredicted RBP12.06□□□□□ -0.48
CLK3-214ENST00000564096 WNT3P56703 355 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 PCBP4P57723 403 aaKnown RBP12.06□□□□□ -0.48
CLK3-214ENST00000564096 FOLH1Q04609 750 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 HSPB3Q12988 150 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 TARDBPQ13148 414 aaKnown RBP eCLIP12.06□□□□□ -0.483e-6■■■□□ 14.6
CLK3-214ENST00000564096 CEBPEQ15744 281 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 SYT16Q17RD7 645 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 SPDYE7PQ495Y7 208 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 MINDY4Q4G0A6 757 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 PAGE3Q5JUK9 113 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 LRIF1Q5T3J3 769 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 BHLHB9Q6PI77 547 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 BNC2Q6ZN30 1099 aaPredicted RBP12.06□□□□□ -0.48
CLK3-214ENST00000564096 QSOX2Q6ZRP7 698 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 MED25Q71SY5 747 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 ZC3H7AQ8IWR0 971 aaKnown RBP12.06□□□□□ -0.48
CLK3-214ENST00000564096 DEFB107AQ8IZN7 70 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 CLECL1Q8IZS7 167 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 OR8J3Q8NGG0 315 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 MOAP1Q96BY2 351 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 LRRC58Q96CX6 371 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 RAB3IPQ96QF0 476 aaPredicted RBP12.06□□□□□ -0.48
CLK3-214ENST00000564096 CGREF1Q99674 301 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 RAD21L1Q9H4I0 556 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 IL1RL2Q9HB29 575 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 TAS2R9Q9NYW1 312 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 CES1P1Q9UKY3 287 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 L3MBTL1Q9Y468 752 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 PCDHGA8Q9Y5G5 932 aa12.06□□□□□ -0.48
CLK3-214ENST00000564096 EP300Q09472 2414 aaPredicted RBP12.06□□□□□ -0.48
CLK3-214ENST00000564096 CFAP73A6NFT4 308 aa12.05□□□□□ -0.48
CLK3-214ENST00000564096 MYO1GB0I1T2 1018 aa12.05□□□□□ -0.48
CLK3-214ENST00000564096 DYRK3O43781 588 aa12.05□□□□□ -0.48
CLK3-214ENST00000564096 FGF17O60258 216 aa12.05□□□□□ -0.48
CLK3-214ENST00000564096 DNAJA2O60884 412 aa12.05□□□□□ -0.48
CLK3-214ENST00000564096 CTNSO60931 367 aa12.05□□□□□ -0.48
CLK3-214ENST00000564096 SCN2BO60939 215 aa12.05□□□□□ -0.48
CLK3-214ENST00000564096 DNAJC8O75937 253 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms