RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 H0YIV9 168 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 CLPSP04118 112 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 ABOP16442 354 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 PHBP35232 272 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 PIK3CBP42338 1070 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 RAP1GDS1P52306 607 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 TNFRSF17Q02223 184 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 GPR180Q86V85 440 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 GHDCQ8N2G8 530 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 TMEM151AQ8N4L1 468 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 MARVELD2Q8N4S9 558 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 ZNF808Q8N4W9 903 aaPredicted RBP16.43■□□□□ 0.22
HDDC3-205ENST00000559898 L3MBTL4Q8NA19 623 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 ZFP62Q8NB50 900 aaPredicted RBP16.43■□□□□ 0.22
HDDC3-205ENST00000559898 LRRN4CLQ8ND94 238 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 SRFBP1Q8NEF9 429 aaKnown RBP16.43■□□□□ 0.22
HDDC3-205ENST00000559898 C16orf52Q8NHV5 167 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 ASB15Q8WXK1 588 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 ROGDIQ9GZN7 287 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 RPF2Q9H7B2 306 aaKnown RBP16.43■□□□□ 0.22
HDDC3-205ENST00000559898 SEMA4BQ9NPR2 832 aaPredicted RBP16.43■□□□□ 0.22
HDDC3-205ENST00000559898 SUCOQ9UBS9 1254 aaKnown RBP16.43■□□□□ 0.22
HDDC3-205ENST00000559898 PCTPQ9UKL6 214 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 ERVK-11Q9UQG0 969 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 ENTPD4Q9Y227 616 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 LIPGQ9Y5X9 500 aa16.43■□□□□ 0.22
HDDC3-205ENST00000559898 CACNA1CQ13936 2221 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 A8MVJ9 347 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 TRIM49D1C9J1S8 452 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 TFECO14948 347 aaPredicted RBP16.42■□□□□ 0.22
HDDC3-205ENST00000559898 PGRMC2O15173 223 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 PROM1O43490 865 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 NADKO95544 446 aaPredicted RBP16.42■□□□□ 0.22
HDDC3-205ENST00000559898 IGKV3-11P04433 115 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 CCL3P10147 92 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 ESRRAP11474 423 aaPredicted RBP16.42■□□□□ 0.22
HDDC3-205ENST00000559898 HTR1EP28566 365 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 HPDP32754 393 aaPredicted RBP16.42■□□□□ 0.22
HDDC3-205ENST00000559898 STT3AP46977 705 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 ASPHQ12797 758 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 TRAF3Q13114 568 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 ART3Q13508 389 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 LYPD8Q6UX82 237 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 OR2M7Q8NG81 312 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 DAZLQ92904 295 aaKnown RBP16.42■□□□□ 0.22
HDDC3-205ENST00000559898 SENP5Q96HI0 755 aaPredicted RBP16.42■□□□□ 0.22
HDDC3-205ENST00000559898 FMO2Q99518 471 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 FARSBQ9NSD9 589 aaKnown RBP16.42■□□□□ 0.22
HDDC3-205ENST00000559898 HPF1Q9NWY4 346 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 TEX10Q9NXF1 929 aaPredicted RBP16.42■□□□□ 0.22
HDDC3-205ENST00000559898 TNFRSF10DQ9UBN6 386 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 MTRF1LQ9UGC7 380 aaKnown RBP16.42■□□□□ 0.22
HDDC3-205ENST00000559898 TSC22D4Q9Y3Q8 395 aa16.42■□□□□ 0.22
HDDC3-205ENST00000559898 DCHS2Q6V1P9 2916 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 APCP25054 2843 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 LRATO95237 230 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 AIFM1O95831 613 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 INHBAP08476 426 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 CELA3AP09093 270 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 DNASE1L1P49184 302 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 SERTAD2Q14140 314 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 EMC4Q5J8M3 183 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 ADGRD1Q6QNK2 874 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 BNC2Q6ZN30 1099 aaPredicted RBP16.41■□□□□ 0.22
HDDC3-205ENST00000559898 CD163Q86VB7 1156 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 TICAM1Q8IUC6 712 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 MMP21Q8N119 569 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 ZCCHC7Q8N3Z6 543 aaKnown RBP16.41■□□□□ 0.22
HDDC3-205ENST00000559898 DGAT2Q96PD7 388 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 DMRTA2Q96SC8 542 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 ZNF225Q9UK10 706 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 PCDHGA11Q9Y5H2 935 aa16.41■□□□□ 0.22
HDDC3-205ENST00000559898 FOXO6A8MYZ6 492 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 KLRC4-KLRK1H3BQV0 150 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 CT62P0C5K7 136 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 FAM153BP0C7A2 387 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 FAM58BPP0C7Q3 252 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 SERPINB1P30740 379 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 KIR3DL1P43629 444 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 CDH13P55290 713 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 HERVK_113P63132 956 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 ERVK-8P63133 956 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 RCN2Q14257 317 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 ZNF630Q2M218 657 aaPredicted RBP16.4■□□□□ 0.22
HDDC3-205ENST00000559898 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.4■□□□□ 0.22
HDDC3-205ENST00000559898 FAM153CQ494X1 144 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 SGO1Q5FBB7 561 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 KLC3Q6P597 504 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 ERVK-6Q9BXR3 956 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 MRPL1Q9BYD6 325 aaKnown RBP16.4■□□□□ 0.22
HDDC3-205ENST00000559898 TTTY12Q9BZ98 90 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 DDX31Q9H8H2 851 aaKnown RBP16.4■□□□□ 0.22
HDDC3-205ENST00000559898 TIMMDC1Q9NPL8 285 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 NFU1Q9UMS0 254 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 ERVK-19Q9WJR5 959 aa16.4■□□□□ 0.22
HDDC3-205ENST00000559898 DNAJC13O75165 2243 aa16.39■□□□□ 0.22
HDDC3-205ENST00000559898 PDZD2O15018 2839 aa16.39■□□□□ 0.21
HDDC3-205ENST00000559898 CDK2AP1O14519 115 aa16.39■□□□□ 0.21
HDDC3-205ENST00000559898 HNRNPRO43390 633 aaKnown RBP16.39■□□□□ 0.21
HDDC3-205ENST00000559898 CLDN9O95484 217 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms