RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 PAX7P23759 505 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 ALDH3B1P43353 468 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 SLC1A6P48664 564 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 NPY2RP49146 381 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 SULT1E1P49888 294 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 CCR4P51679 360 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 C21orf58P58505 322 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 UBE2HP62256 183 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 MFGE8Q08431 387 aaPredicted RBP2.78□□□□□ -1.96
TRAV28-201ENST00000557548 DMTNQ08495 405 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 RIPK1Q13546 671 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 MEF2DQ14814 521 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 C3AR1Q16581 482 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 ZNF74Q16587 644 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 CLPPQ16740 277 aaPredicted RBP2.78□□□□□ -1.96
TRAV28-201ENST00000557548 CCDC152Q4G0S7 254 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 BOLA3Q53S33 107 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 WDR38Q5JTN6 314 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 CFAP157Q5JU67 520 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 ARHGEF16Q5VV41 709 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 PLPP4Q5VZY2 271 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 C9orf57Q5W0N0 161 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 NCR3LG1Q68D85 454 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 LEKR1Q6ZMV7 388 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 LIN28BQ6ZN17 250 aaKnown RBP eCLIP2.78□□□□□ -1.96
TRAV28-201ENST00000557548 RFPL4BQ6ZWI9 263 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 C16orf82Q7Z2V1 217 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 CACUL1Q86Y37 369 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 SPATA2LQ8IUW3 424 aaPredicted RBP2.78□□□□□ -1.96
TRAV28-201ENST00000557548 ZDHHC21Q8IVQ6 265 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 GCNT2Q8N0V5 402 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 METTL27Q8N6F8 245 aaPredicted RBP2.78□□□□□ -1.96
TRAV28-201ENST00000557548 FAM133AQ8N9E0 248 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 COLGALT1Q8NBJ5 622 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 DMBX1Q8NFW5 382 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 TRIM58Q8NG06 486 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 FCAMRQ8WWV6 532 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 P3H4Q92791 437 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 NCLNQ969V3 563 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 IGSF21Q96ID5 467 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 COG3Q96JB2 828 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 ZNF479Q96JC4 524 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 CNDP1Q96KN2 507 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 C4orf36Q96KX1 117 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 C10orf90Q96M02 699 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 GSDMAQ96QA5 445 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 IL12RB2Q99665 862 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 EDEM2Q9BV94 578 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 SLC29A3Q9BZD2 475 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 CXXC4Q9H2H0 198 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 VPS37BQ9H9H4 285 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.78□□□□□ -1.96
TRAV28-201ENST00000557548 AIPL1Q9NZN9 384 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 COX16Q9P0S2 106 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 LHX3Q9UBR4 397 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 NACADO15069 1562 aa2.78□□□□□ -1.96
TRAV28-201ENST00000557548 RAD54L2Q9Y4B4 1467 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ARID2Q68CP9 1835 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 SF3B1O75533 1304 aaKnown RBP eCLIP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 GLTPD2A6NH11 291 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 SHISA7A6NL88 538 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 CCDC169A6NNP5 214 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ANHXE9PGG2 379 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 LMO7DNF2Z398 122 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 K7EQM0 130 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 CXCL11O14625 94 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 MAGEB3O15480 346 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 OR4F21O95013 312 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 MFN2O95140 757 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 UMODP07911 640 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 LYNP07948 512 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 IQCF3P0C7M6 154 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 PRKAR1AP10644 381 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 SLC2A2P11168 524 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 RPA2P15927 270 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 RPL35AP18077 110 aaKnown RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 AADACP22760 399 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 GLRA1P23415 457 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 DCTP40126 519 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 PTGFRP43088 359 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 PTGER3P43115 390 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 OR3A2P47893 321 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 DHPSP49366 369 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ART1P52961 327 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 BACE1P56817 501 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 NUCB2P80303 420 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 SPIBQ01892 262 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 SRSF9Q13242 221 aaKnown RBP eCLIP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 NFATC2Q13469 925 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 TRIP10Q15642 601 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 PDK4Q16654 411 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 TPD52L1Q16890 204 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 CCDC57Q2TAC2 916 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ANKRD55Q3KP44 614 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 RABL6Q3YEC7 729 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 LRRC23Q53EV4 343 aaPredicted RBP2.77□□□□□ -1.97
TRAV28-201ENST00000557548 CCDC183Q5T5S1 534 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 DCAF12Q5T6F0 453 aa2.77□□□□□ -1.97
TRAV28-201ENST00000557548 ATP1A1-AS1Q5TC04 95 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms