RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CELSR3Q9NYQ7 3312 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 A0A087WV48 116 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 TCRBV16S1A1N1A0A5B0 115 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 C1orf226A1L170 272 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 TMEM8BA6NDV4 472 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 GABRR3A8MPY1 467 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 CLDN4O14493 209 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 RRP8O43159 456 aaKnown RBP12.02□□□□□ -0.49
SHMT2-227ENST00000557269 GUCY1B2O75343 617 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 GPR75O95800 540 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 TROVE2P10155 538 aaKnown RBP eCLIP12.02□□□□□ -0.49
SHMT2-227ENST00000557269 PRKAR1AP10644 381 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 PRPS2P11908 318 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 DRD2P14416 443 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 CD1EP15812 388 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 DDCP20711 480 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 MMP11P24347 488 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 MAPK1P28482 360 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 NME5P56597 212 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 IGLV3-21P80748 117 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-227ENST00000557269 MAD2L1Q13257 205 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-227ENST00000557269 NSDHLQ15738 373 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 UGT8Q16880 541 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 MPEG1Q2M385 716 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF385BQ569K4 471 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 OR52E8Q6IFG1 317 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 DGAT2L6Q6ZPD8 337 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 IKBIPQ70UQ0 350 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 TICAM1Q8IUC6 712 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 RIMKLAQ8IXN7 391 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 DOK4Q8TEW6 326 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 C10orf82Q8WW14 230 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 EXOSC8Q96B26 276 aaKnown RBP12.02□□□□□ -0.49
SHMT2-227ENST00000557269 PPWD1Q96BP3 646 aaKnown RBP12.02□□□□□ -0.49
SHMT2-227ENST00000557269 CATSPER2Q96P56 530 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 ELAC2Q9BQ52 826 aaKnown RBP12.02□□□□□ -0.49
SHMT2-227ENST00000557269 SIKE1Q9BRV8 207 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 EFHD1Q9BUP0 239 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 FAIM2Q9BWQ8 316 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 ALOXE3Q9BYJ1 711 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 REEP4Q9H6H4 257 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 WDR41Q9HAD4 459 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 CPNE5Q9HCH3 593 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 KLHL14Q9P2G3 628 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 MRPS33Q9Y291 106 aaKnown RBP12.02□□□□□ -0.49
SHMT2-227ENST00000557269 IGF2RP11717 2491 aa12.02□□□□□ -0.49
SHMT2-227ENST00000557269 LOC102723996A0A087X1L8 192 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 BLACEA4D250 179 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 CDC14CA4D256 554 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 A8MUA0 341 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 C9JVG2 144 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 UBDO15205 165 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 IL12AP29459 219 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 PTGER1P34995 402 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 FEN1P39748 380 aaKnown RBP12.01□□□□□ -0.49
SHMT2-227ENST00000557269 GSTM5P46439 218 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 CLDN8P56748 225 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 UFM1P61960 85 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 FOXK2Q01167 660 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 EEF1A2Q05639 463 aaKnown RBP12.01□□□□□ -0.49
SHMT2-227ENST00000557269 STX4Q12846 297 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 ATP1A4Q13733 1029 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 PDE7AQ13946 482 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 HEPACAMQ14CZ8 416 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 SFT2D3Q587I9 215 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 MRGPREQ86SM8 312 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 OR7A2PQ8NGA2 310 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 OR11G2Q8NGC1 345 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 OR4K14Q8NGD5 310 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 STON2Q8WXE9 905 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 CNRIP1Q96F85 164 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF681Q96N22 645 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 RILPQ96NA2 401 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 CNTNAP3BQ96NU0 1288 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 WDR77Q9BQA1 342 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-227ENST00000557269 CNTNAP3Q9BZ76 1288 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 BRINP2Q9C0B6 783 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 UTS2RQ9UKP6 389 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 ZMIZ1Q9ULJ6 1067 aa12.01□□□□□ -0.49
SHMT2-227ENST00000557269 WBP11Q9Y2W2 641 aaKnown RBP12.01□□□□□ -0.49
SHMT2-227ENST00000557269 CHD8Q9HCK8 2581 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 ZNF891A8MT65 544 aaPredicted RBP12□□□□□ -0.49
SHMT2-227ENST00000557269 SCAMP2O15127 329 aaKnown RBP12□□□□□ -0.49
SHMT2-227ENST00000557269 SHOX2O60902 331 aaPredicted RBP12□□□□□ -0.49
SHMT2-227ENST00000557269 ERAL1O75616 437 aaKnown RBP12□□□□□ -0.49
SHMT2-227ENST00000557269 IGHEP01854 428 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 CYC1P08574 325 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 LAMP1P11279 417 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 COX6A1P12074 109 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 ASMTP46597 345 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 XKP51811 444 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 ARFIP2P53365 341 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 C21orf58P58505 322 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 ACTN3Q08043 901 aaPredicted RBP12□□□□□ -0.49
SHMT2-227ENST00000557269 CDC20Q12834 499 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 PCOLCEQ15113 449 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 CCDC81Q6ZN84 652 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 LRRC69Q6ZNQ3 347 aa12□□□□□ -0.49
SHMT2-227ENST00000557269 CPEB2Q7Z5Q1 589 aaKnown RBP12□□□□□ -0.49
SHMT2-227ENST00000557269 PARP9Q8IXQ6 854 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms