RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 TRPV3Q8NET8 790 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 SPATA18Q8TC71 538 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 SNX21Q969T3 373 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 ULK4Q96C45 1275 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 ATXN7L3BQ96GX2 97 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 S1PR3Q99500 378 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 NTMT1Q9BV86 223 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 PINK1Q9BXM7 581 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 TRIM7Q9C029 511 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 ZNF665Q9H7R5 613 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 COMMD8Q9NX08 183 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 THAP10Q9P2Z0 257 aaPredicted RBP2.37□□□□□ -2.03
SCFD1-218ENST00000556256 KLK11Q9UBX7 282 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 PLCL2Q9UPR0 1127 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 KCNK6Q9Y257 313 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 SNX5Q9Y5X3 404 aa2.37□□□□□ -2.03
SCFD1-218ENST00000556256 IGHV4-30-2A0A087WSY4 118 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 TRAFD1O14545 582 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-218ENST00000556256 CXCL14O95715 111 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 CPNE6O95741 557 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 HPP00738 406 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 EPOP01588 193 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 MMP10P09238 476 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 HMOX1P09601 288 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 CT45A8P0DMV1 189 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 CT45A9P0DMV2 189 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 GLRA1P23415 457 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 ETV5P41161 510 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 FHITP49789 147 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 CRYBA2P53672 197 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 ERVK-16P61578 105 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 ARF5P84085 180 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 UBXN1Q04323 297 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 PPP2R5CQ13362 524 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 STX1AQ16623 288 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 UPP1Q16831 310 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 EPC2Q52LR7 807 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 IFI44LQ53G44 452 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 CT45A2Q5DJT8 189 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 LYPLAL1Q5VWZ2 237 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 CAPN13Q6MZZ7 669 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-218ENST00000556256 LCLAT1Q6UWP7 414 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 RFPL4BQ6ZWI9 263 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 STHQ8IWL8 128 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 THEM5Q8N1Q8 247 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 RTL3Q8N8U3 475 aaKnown RBP2.36□□□□□ -2.03
SCFD1-218ENST00000556256 GPR148Q8TDV2 347 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-218ENST00000556256 HAS2Q92819 552 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 CFAP36Q96G28 342 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 CCDC43Q96MW1 224 aaKnown RBP2.36□□□□□ -2.03
SCFD1-218ENST00000556256 ERGIC2Q96RQ1 377 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 LGMNQ99538 433 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 MTIF3Q9H2K0 278 aaKnown RBP2.36□□□□□ -2.03
SCFD1-218ENST00000556256 S100A14Q9HCY8 104 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 KCNMB3Q9NPA1 279 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 IL1RAPQ9NPH3 570 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 B3GAT2Q9NPZ5 323 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 NLGN3Q9NZ94 848 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 ZNF319Q9P2F9 582 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 TSPAN16Q9UKR8 245 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 ERVK-19Q9WJR5 959 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 EXOC6BQ9Y2D4 811 aa2.36□□□□□ -2.03
SCFD1-218ENST00000556256 DHX29Q7Z478 1369 aaKnown RBP2.36□□□□□ -2.03
SCFD1-218ENST00000556256 A0A087WWV3 80 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 IQCMA0A1B0GVH7 501 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 TRIM64A6NGJ6 449 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 TRIM64BA6NI03 449 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 K7EQG2 157 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 SLC28A1O00337 649 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 CCSO14618 274 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 TFECO14948 347 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-218ENST00000556256 PSMD3O43242 534 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 GALR3O60755 368 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-218ENST00000556256 KERAO60938 352 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 CHRNGP07510 517 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 MGMTP16455 207 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 ZNF19P17023 458 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 FCARP24071 287 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 PKLRP30613 574 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 FCGR2BP31994 310 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-218ENST00000556256 FCGR2CP31995 323 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 CAPGP40121 348 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 PRELPP51888 382 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 SMSP52788 366 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 YBEYP58557 167 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-218ENST00000556256 AP1B1Q10567 949 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 LCP2Q13094 533 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 KIAA0141Q14154 515 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-218ENST00000556256 GIT2Q14161 759 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 OR1C1Q15619 314 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 MLF2Q15773 248 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-218ENST00000556256 RFTN2Q52LD8 501 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-218ENST00000556256 SNRNP48Q6IEG0 339 aaKnown RBP2.35□□□□□ -2.03
SCFD1-218ENST00000556256 NEPROQ6NW34 567 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 ALKBH5Q6P6C2 394 aaKnown RBP2.35□□□□□ -2.03
SCFD1-218ENST00000556256 BAIAP2L2Q6UXY1 529 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 B3GLCTQ6Y288 498 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 C17orf64Q86WR6 236 aa2.35□□□□□ -2.03
SCFD1-218ENST00000556256 PHC2Q8IXK0 858 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms