RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 FRG2Q64ET8 278 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 RETSATQ6NUM9 610 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 C17orf99Q6UX52 265 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 KIAA1324Q6UXG2 1013 aaKnown RBP4.63□□□□□ -1.67
LIMA1-214ENST00000552783 SERPINA13PQ6UXR4 307 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 COMTD1Q86VU5 262 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 NR2C2APQ86WQ0 139 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 ESX1Q8N693 406 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 NANOGP1Q8N7R0 232 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 TCEANCQ8N8B7 351 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 SLC43A3Q8NBI5 491 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 HUS1BQ8NHY5 278 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 WFDC5Q8TCV5 224 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 GATAD2BQ8WXI9 593 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 TTC9Q92623 222 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 CMTM7Q96FZ5 175 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 MSANTD3Q96H12 275 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 MYO19Q96H55 970 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 FRG2BQ96QU4 278 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 NELL2Q99435 816 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 WACQ9BTA9 647 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 DUSP26Q9BV47 211 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 SLC29A3Q9BZD2 475 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 TRIM45Q9H8W5 580 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-214ENST00000552783 SH3BP4Q9P0V3 963 aa4.63□□□□□ -1.67
LIMA1-214ENST00000552783 LSM7Q9UK45 103 aaKnown RBP4.63□□□□□ -1.67
LIMA1-214ENST00000552783 CASP8AP2Q9UKL3 1982 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 VWA8A3KMH1 1905 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 A0A0A6YYJ9 748 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 GNG14A0A1W2PPG7 69 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 OR2AG2A6NM03 316 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 HRO43593 1189 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 KDELR3O43731 214 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 GADD45GO95257 159 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SLC2A2P11168 524 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 CYBAP13498 195 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ANXA8P13928 327 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 DGKAP23743 735 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 CSKP41240 450 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 XCR1P46094 333 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 AP2S1P53680 142 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 CDH4P55283 916 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 CDC42P60953 191 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 RRAS2P62070 204 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 FABP5Q01469 135 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SP3Q02447 781 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 RUNX1T1Q06455 604 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 MFSD13AQ14CX5 517 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 WSCD2Q2TBF2 565 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ERICH5Q6P6B1 374 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM91Q6ZNR0 172 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 CREB3L2Q70SY1 520 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 RTN4RL1Q86UN2 441 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 PLCZ1Q86YW0 608 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 C1orf52Q8N6N3 182 aaKnown RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 GPR26Q8NDV2 337 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF680Q8NEM1 530 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 OR11H7Q8NGC8 314 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 OR8J2Q8NGG1 315 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 OR4D11Q8NGI4 311 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 CD99L2Q8TCZ2 262 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 UBTD2Q8WUN7 234 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 MYLIPQ8WY64 445 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 C11orf24Q96F05 449 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 GPA33Q99795 319 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 C17orf62Q9BQA9 187 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SMG9Q9H0W8 520 aaKnown RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ZFP64Q9NPA5 681 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 FZD3Q9NPG1 666 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 C12orf4Q9NQ89 552 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 RBFOX1Q9NWB1 397 aaKnown RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 RNF186Q9NXI6 227 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SLCO1C1Q9NYB5 712 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 KLHL21Q9UJP4 597 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 RAB23Q9ULC3 237 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 AP3M1Q9Y2T2 418 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 SPIN1Q9Y657 262 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 KIAA1671Q9BY89 1806 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ISM1B1AKI9 464 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 E7EQ34 232 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 TLR4O00206 839 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 MYL12BO14950 172 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 LYRM1O43325 122 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 DPM1O60762 260 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 OR7A10O76100 309 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 OAZ2O95190 189 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 MPC2O95563 127 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 C6orf47O95873 294 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 TP53P04637 393 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-214ENST00000552783 MYL12AP19105 171 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 M6PRP20645 277 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 DDCP20711 480 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 IDSP22304 550 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 ACRV1P26436 265 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 GABRR2P28476 465 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 PCGF2P35227 344 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 PER3P56645 1201 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 PFN3P60673 137 aa4.62□□□□□ -1.67
LIMA1-214ENST00000552783 RHAGQ02094 409 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms