RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.31□□□□□ -0.12
CUX1-214ENST00000550008 OMA1Q96E52 524 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 SH3YL1Q96HL8 342 aaPredicted RBP14.31□□□□□ -0.12
CUX1-214ENST00000550008 C5orf34Q96MH7 638 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 LHPPQ9H008 270 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 POLE4Q9NR33 117 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 DAPL1A0PJW8 107 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 CERS1P27544 350 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 HOXC8P31273 242 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 RAB30Q15771 203 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 SLC14A2Q15849 920 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 UGT3A2Q3SY77 523 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 ARL9Q6T311 187 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 OR52N2Q8NGI0 321 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 SETD7Q8WTS6 366 aaKnown RBP14.31□□□□□ -0.12
CUX1-214ENST00000550008 KLHDC7BQ96G42 594 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 TMED9Q9BVK6 235 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 SARDHQ9UL12 918 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 A0A1B0GVG6 124 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 KHNYNO15037 678 aaKnown RBP14.31□□□□□ -0.12
CUX1-214ENST00000550008 ZNF821O75541 412 aaPredicted RBP14.31□□□□□ -0.12
CUX1-214ENST00000550008 PFKLP17858 780 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 CXXC5Q7LFL8 322 aaKnown RBP14.31□□□□□ -0.12
CUX1-214ENST00000550008 PIWIL3Q7Z3Z3 882 aaKnown RBP14.31□□□□□ -0.12
CUX1-214ENST00000550008 ASPGQ86U10 573 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 OR56A1Q8NGH5 318 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 RFKQ969G6 155 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 C11orf24Q96F05 449 aaPredicted RBP14.31□□□□□ -0.12
CUX1-214ENST00000550008 BHLHE41Q9C0J9 482 aaPredicted RBP14.31□□□□□ -0.12
CUX1-214ENST00000550008 OR8D2Q9GZM6 311 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 DZANK1Q9NVP4 752 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 CNOT11Q9UKZ1 510 aaKnown RBP14.31□□□□□ -0.12
CUX1-214ENST00000550008 CLCA3PQ9Y6N3 262 aa14.31□□□□□ -0.12
CUX1-214ENST00000550008 FAM240BA0A1B0GVZ2 78 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 RETP07949 1114 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 IFI30P13284 250 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 CDH11P55287 796 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 TAP2Q03519 686 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 LGALS3BPQ08380 585 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 CMPK2Q5EBM0 449 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 MLIPQ5VWP3 458 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 OR4C11Q6IEV9 310 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 FRRS1Q6ZNA5 592 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 SLC25A36Q96CQ1 311 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 ECHDC3Q96DC8 303 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 NAA50Q9GZZ1 169 aaKnown RBP14.3□□□□□ -0.12
CUX1-214ENST00000550008 IL37Q9NZH6 218 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 PRRT4C9JH25 899 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 GPR37L1O60883 481 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 SDC3O75056 442 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 PVRP15151 417 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 P2RY2P41231 377 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 ST3GAL3Q11203 375 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 EOGTQ5NDL2 527 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 PNCKQ6P2M8 343 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 USP53Q70EK8 1073 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 OLIG3Q7RTU3 272 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 ZFP41Q8N8Y5 198 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 GOLM1Q8NBJ4 401 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 ZNF548Q8NEK5 533 aaPredicted RBP14.3□□□□□ -0.12
CUX1-214ENST00000550008 FCGR1BQ92637 280 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 GFM1Q96RP9 751 aaKnown RBP14.3□□□□□ -0.12
CUX1-214ENST00000550008 MAPKAP1Q9BPZ7 522 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 SLC35C2Q9NQQ7 365 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 TUBA8Q9NY65 449 aaPredicted RBP14.3□□□□□ -0.12
CUX1-214ENST00000550008 GVINP1Q7Z2Y8 2422 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 H3BNC9 293 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 ACOX3O15254 700 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 SUOXP51687 545 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 LSAMPQ13449 338 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 SHFQ7M4L6 423 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 LHFPL3Q86UP9 236 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 FAM217AQ8IXS0 508 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 RDH12Q96NR8 316 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 OSBPL10Q9BXB5 764 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 MCUBQ9NWR8 336 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 GPR52Q9Y2T5 361 aa14.3□□□□□ -0.12
CUX1-214ENST00000550008 IQCMA0A1B0GVH7 501 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 PCDHGA12O60330 932 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 RAB25P57735 213 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 RBBP4Q09028 425 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 QPRTQ15274 297 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 PLET1Q6UQ28 207 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 GABRA3P34903 492 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 MMP12P39900 470 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 SMSP52788 366 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 IRF4Q15306 451 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 HMBOX1Q6NT76 420 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 ZNF544Q6NX49 715 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 ZC3H14Q6PJT7 736 aaKnown RBP14.29□□□□□ -0.12
CUX1-214ENST00000550008 ZNF248Q8NDW4 579 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 AP3S1Q92572 193 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 MMABQ96EY8 250 aaPredicted RBP14.29□□□□□ -0.12
CUX1-214ENST00000550008 UHRF1Q96T88 793 aaPredicted RBP14.29□□□□□ -0.12
CUX1-214ENST00000550008 STARD5Q9NSY2 213 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 CD300AQ9UGN4 299 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 CNR2P34972 360 aa14.29□□□□□ -0.12
CUX1-214ENST00000550008 MLLT3P42568 568 aaPredicted RBP14.29□□□□□ -0.12
CUX1-214ENST00000550008 TXNL4AP83876 142 aaKnown RBP14.29□□□□□ -0.12
CUX1-214ENST00000550008 VLDLRP98155 873 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms