RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 POLR2GP62487 172 aaKnown RBP eCLIP13.35□□□□□ -0.27
LIG1-203ENST00000536218 PSPHP78330 225 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 C2orf80Q0P641 193 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 CAMK2GQ13555 558 aaPredicted RBP13.35□□□□□ -0.27
LIG1-203ENST00000536218 SNAPC1Q16533 368 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 ARHGAP15Q53QZ3 475 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 TMEM215Q68D42 235 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 ZNF605Q86T29 641 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 GPAT4Q86UL3 456 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 DPP10Q8N608 796 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 C12orf57Q99622 126 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 COPS8Q99627 209 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 SLC6A17Q9H1V8 727 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 NUDT4Q9NZJ9 180 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 ERVW-1Q9UQF0 538 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 HS3ST2Q9Y278 367 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 PLXNA4Q9HCM2 1894 aa13.35□□□□□ -0.27
LIG1-203ENST00000536218 A0A1W2PQL4 384 aaPredicted RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 PLATP00750 562 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 ZNF81P51508 661 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 HTRA4P83105 476 aaPredicted RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 BOP1Q14137 746 aaKnown RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 ELOAQ14241 798 aaKnown RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 ZNF273Q14593 569 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 NR6A1Q15406 480 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.34□□□□□ -0.271e-7■■□□□ 12.5
LIG1-203ENST00000536218 FBXO46Q6PJ61 603 aaPredicted RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 ZNF782Q6ZMW2 699 aaPredicted RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 C12orf76Q8N812 135 aaPredicted RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 SPPL3Q8TCT6 385 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 KLHL6Q8WZ60 621 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 CLP1Q92989 425 aaKnown RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 KLHL15Q96M94 604 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 CCDC115Q96NT0 180 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 ZNF416Q9BWM5 594 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 PCDHB16Q9NRJ7 776 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 SPATA6Q9NWH7 488 aaPredicted RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 COPS3Q9UNS2 423 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 PCDH17O14917 1159 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 SOX3P41225 446 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 MAPKAPK3Q16644 382 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 TUSC1Q2TAM9 212 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 HKDC1Q2TB90 917 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 ARSIQ5FYB1 569 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 Q6ZSR9 355 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 ATP6V1C2Q8NEY4 427 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 OR6M1Q8NGM8 313 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 FANK1Q8TC84 345 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 VOPP1Q96AW1 172 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 UPRTQ96BW1 309 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 LMLNQ96KR4 655 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 RAD9AQ99638 391 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 CCM2Q9BSQ5 444 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 BRINP2Q9C0B6 783 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 SIRT5Q9NXA8 310 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 PCDHGA6Q9Y5G7 932 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 KLK4Q9Y5K2 254 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 OR7A17O14581 309 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 TAPBPO15533 448 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 LZTS3O60299 673 aaPredicted RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 NUP62P37198 522 aaPredicted RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 CSNK1DP48730 415 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 RPL6Q02878 288 aaKnown RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 FAM174BQ3ZCQ3 159 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 GPRC6AQ5T6X5 926 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 ERICH5Q6P6B1 374 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 OR8J3Q8NGG0 315 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 WDR36Q8NI36 951 aaKnown RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 SLC22A8Q8TCC7 542 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 SLC9A6Q92581 669 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 RADILQ96JH8 1075 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 WACQ9BTA9 647 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 TMEM106CQ9BVX2 250 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 CERS4Q9HA82 394 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 NDRG2Q9UN36 371 aaKnown RBP13.34□□□□□ -0.27
LIG1-203ENST00000536218 BAIAP2Q9UQB8 552 aa13.34□□□□□ -0.27
LIG1-203ENST00000536218 ORC5O43913 435 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 LEFTY1O75610 366 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 AP2A2O94973 939 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 IFNA7P01567 189 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 ABRAXAS2Q15018 415 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 RUNDC3AQ59EK9 446 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 BHLHB9Q6PI77 547 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 SERPINA13PQ6UXR4 307 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 Q6ZVL8 140 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 ADIPOR2Q86V24 386 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 OR2A12Q8NGT7 310 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 SLC13A3Q8WWT9 602 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 HTATIP2Q9BUP3 242 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 PRM3Q9NNZ6 103 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 UBQLN2Q9UHD9 624 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 TNPO3Q9Y5L0 923 aaKnown RBP13.33□□□□□ -0.28
LIG1-203ENST00000536218 CEP290O15078 2479 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 TEX46H3BTG2 121 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 C1SP09871 688 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 SLC2A2P11168 524 aaPredicted RBP13.33□□□□□ -0.28
LIG1-203ENST00000536218 CD9P21926 228 aa13.33□□□□□ -0.28
LIG1-203ENST00000536218 APEX1P27695 318 aaKnown RBP13.33□□□□□ -0.28
LIG1-203ENST00000536218 DNAJA1P31689 397 aaKnown RBP13.33□□□□□ -0.28
LIG1-203ENST00000536218 CCR7P32248 378 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms