RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 SLC22A25Q6T423 547 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 C15orf52Q6ZUT6 534 aaKnown RBP8.58□□□□□ -1.04
VCAN-208ENST00000512590 OR2T3Q8NH03 318 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 TCP10LQ8TDR4 215 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 CA5BP1Q8WTZ4 195 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 CD180Q99467 661 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 PBX4Q9BYU1 374 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 PAK6Q9NQU5 681 aaPredicted RBP8.58□□□□□ -1.04
VCAN-208ENST00000512590 DNAJC27Q9NZQ0 273 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 FBXL3Q9UKT7 428 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 POMPQ9Y244 141 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 BCAS2O75934 225 aaPredicted RBP8.58□□□□□ -1.04
VCAN-208ENST00000512590 TBPP20226 339 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 RPS23P62266 143 aaKnown RBP8.58□□□□□ -1.04
VCAN-208ENST00000512590 OTOP1Q7RTM1 612 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 TMEM130Q8N3G9 435 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 OR2AP1Q8NGE2 309 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 MBOAT7Q96N66 472 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 PDCD1LG2Q9BQ51 273 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 HRASLSQ9HDD0 168 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 C1orf109Q9NX04 203 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 OBP2AQ9NY56 170 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 KDM5AP29375 1690 aaKnown RBP8.58□□□□□ -1.04
VCAN-208ENST00000512590 A0A0U1RQK1 487 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 C17orf113A0A1B0GUU1 675 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 SLITRK3O94933 977 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 C5AR1P21730 350 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 NUDT1P36639 197 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 HOXA1P49639 335 aaPredicted RBP8.58□□□□□ -1.04
VCAN-208ENST00000512590 THBS3P49746 956 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 STK19P49842 368 aaPredicted RBP8.58□□□□□ -1.04
VCAN-208ENST00000512590 LRRN4Q8WUT4 740 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 TRMT61AQ96FX7 289 aaKnown RBP8.58□□□□□ -1.04
VCAN-208ENST00000512590 TCTN2Q96GX1 697 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 TWNKQ96RR1 684 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 EDEM2Q9BV94 578 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 XKR8Q9H6D3 395 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 VSX1Q9NZR4 365 aaPredicted RBP8.58□□□□□ -1.04
VCAN-208ENST00000512590 ACTR3BQ9P1U1 418 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 RAB26Q9ULW5 256 aa8.58□□□□□ -1.04
VCAN-208ENST00000512590 RNF17Q9BXT8 1623 aaKnown RBP8.57□□□□□ -1.04
VCAN-208ENST00000512590 TRBV11-1A0A0K0K1C0 115 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 SIGLEC6O43699 453 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 UGDHO60701 494 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 FAHP16930 419 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 HRH2P25021 359 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 SLC19A1P41440 591 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 MXD1Q05195 221 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 TMEM63BQ5T3F8 832 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 TSTD2Q5T7W7 516 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 BCL2L15Q5TBC7 163 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 C22orf39Q6P5X5 142 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 PLET1Q6UQ28 207 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 PIWIL4Q7Z3Z4 852 aaKnown RBP8.57□□□□□ -1.04
VCAN-208ENST00000512590 ANKRD46Q86W74 232 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 ZNF761Q86XN6 746 aaPredicted RBP8.57□□□□□ -1.04
VCAN-208ENST00000512590 FBXL14Q8N1E6 418 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 GALNT15Q8N3T1 639 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 TOE1Q96GM8 510 aaKnown RBP8.57□□□□□ -1.04
VCAN-208ENST00000512590 RNF157Q96PX1 679 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 XPNPEP1Q9NQW7 623 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 ZIM2Q9NZV7 527 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 E7ESA3 106 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 SLC19A2O60779 497 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 F2P00734 622 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 IFNA17P01571 189 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 IL2RAP01589 272 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 ESR1P03372 595 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 SERPINA7P05543 415 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 SLC2A2P11168 524 aaPredicted RBP8.57□□□□□ -1.04
VCAN-208ENST00000512590 AOC1P19801 751 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 PCGF2P35227 344 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 GABREP78334 506 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 TEKQ02763 1124 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 SLC3A1Q07837 685 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 PTPRRQ15256 657 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 KCNJ8Q15842 424 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 KCTD21Q4G0X4 260 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 LARP4Q71RC2 724 aaKnown RBP eCLIP8.57□□□□□ -1.04
VCAN-208ENST00000512590 PRR7Q8TB68 274 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 IGDCC4Q8TDY8 1250 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 TCTEX1D2Q8WW35 142 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 ANKRD7Q92527 254 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 CAVIN3Q969G5 261 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 DCLRE1CQ96SD1 692 aaKnown RBP8.57□□□□□ -1.04
VCAN-208ENST00000512590 SLC35A5Q9BS91 424 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 SLC2A11Q9BYW1 496 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 ARHGAP39Q9C0H5 1083 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 MVB12BQ9H7P6 319 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 MYNNQ9NPC7 610 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 GFOD1Q9NXC2 390 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 TNFRSF10DQ9UBN6 386 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 NKX1-2Q9UD57 310 aaPredicted RBP8.57□□□□□ -1.04
VCAN-208ENST00000512590 MED16Q9Y2X0 877 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 ARHGEF40Q8TER5 1519 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 LRIT2A6NDA9 550 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 SOWAHBA6NEL2 793 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 TVP23AA6NH52 213 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 SULT2B1O00204 365 aa8.57□□□□□ -1.04
VCAN-208ENST00000512590 CTDNEP1O95476 244 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms