RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 S1PR4O95977 384 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 MAGEA2P43356 314 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 FOXK1P85037 733 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 SPIN3Q5JUX0 258 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 SLC35F1Q5T1Q4 408 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 NXPE4Q6UWF7 544 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 SLITRK4Q8IW52 837 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 PHTF2Q8N3S3 785 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 TTC9BQ8N6N2 239 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ACOT12Q8WYK0 555 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 PKP2Q99959 881 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 WASF3Q9UPY6 502 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 C5orf51A6NDU8 294 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ENTPD6O75354 484 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 KDM4BO94953 1096 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 HSD3B1P14060 373 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 HSD3B2P26439 372 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 GBX1Q14549 363 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 GRM7Q14831 915 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 C6orf136Q5SQH8 315 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 OR52E8Q6IFG1 317 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 CHST14Q8NCH0 376 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 PHOX2BQ99453 314 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 TMEM246Q9BRR3 403 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 OR51I1Q9H343 314 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 TM9SF3Q9HD45 589 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 C12orf71A8MTZ7 269 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 BHMG1C9JSJ3 638 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-215ENST00000496447 DENRO43583 198 aaKnown RBP12.6□□□□□ -0.39
PTPRF-215ENST00000496447 KCNJ13O60928 360 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 DNAJB5O75953 348 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 RNF144AP50876 292 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF45Q02386 682 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 FAM69BQ5VUD6 431 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ANKRD13BQ86YJ7 626 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 RHEBL1Q8TAI7 183 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 LINC00597Q9H2U6 94 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 FBRSL1Q9HCM7 1045 aaKnown RBP12.6□□□□□ -0.39
PTPRF-215ENST00000496447 HHATLQ9HCP6 504 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 PCDHB16Q9NRJ7 776 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 GDE1Q9NZC3 331 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 LRP6O75581 1613 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 PHRF1Q9P1Y6 1649 aaKnown RBP12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ACOX3O15254 700 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ABCB7O75027 752 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ITGB1P05556 798 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ATP4BP51164 291 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF404Q494X3 552 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF613Q6PF04 617 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF227Q86WZ6 799 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 LRRC15Q8TF66 581 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 RPF2Q9H7B2 306 aaKnown RBP12.6□□□□□ -0.39
PTPRF-215ENST00000496447 BRF2Q9HAW0 419 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 MGAT4BQ9UQ53 548 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 PLEKHA6Q9Y2H5 1048 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 HCN4Q9Y3Q4 1203 aa12.6□□□□□ -0.39
PTPRF-215ENST00000496447 LOC100130705A0A1B0GUX0 176 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 L7N2F9 121 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 HSPA12AO43301 675 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 HBQ1P09105 142 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 PEPDP12955 493 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 BPIP17213 487 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 CEBPBP17676 345 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 RPS3AP61247 264 aaKnown RBP12.59□□□□□ -0.39
PTPRF-215ENST00000496447 VAMP2P63027 116 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 DEFB103AP81534 67 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 MLLT1Q03111 559 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-215ENST00000496447 SLC10A2Q12908 348 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-215ENST00000496447 TMEM107Q6UX40 140 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 TMPPEQ6ZT21 453 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 OR6N2Q8NGY6 317 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 NSUN5Q96P11 429 aaKnown RBP12.59□□□□□ -0.39
PTPRF-215ENST00000496447 SMURF1Q9HCE7 757 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 PRH1P02810 166 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 SRCP12931 536 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 HMGCLP35914 325 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 DCDC1P59894 354 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 KCNC4Q03721 635 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 DSC1Q08554 894 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 CBLBQ13191 982 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 NFE2L1Q14494 772 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 SGCAQ16586 387 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 TMEM35AQ53FP2 167 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 FIGLAQ6QHK4 219 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 RABEPKQ7Z6M1 372 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 TSPAN33Q86UF1 283 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF100Q8IYN0 542 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 SLC39A11Q8N1S5 342 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF615Q8N8J6 731 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 ADAMTS18Q8TE60 1221 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 RHBDD1Q8TEB9 315 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 SHISA4Q96DD7 197 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 SCGB3A2Q96PL1 93 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 ST14Q9Y5Y6 855 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 PLOD2O00469 737 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 PRKCDQ05655 676 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 RAB39AQ14964 217 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 ZNF782Q6ZMW2 699 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-215ENST00000496447 ZFAND4Q86XD8 727 aa12.59□□□□□ -0.39
PTPRF-215ENST00000496447 UBQLNLQ8IYU4 475 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms