RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 PROK2Q9HC23 129 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PSD3Q9NYI0 1048 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 COQ3Q9NZJ6 369 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NUDT4Q9NZJ9 180 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ADGRE2Q9UHX3 823 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RNF112Q9ULX5 631 aa11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MAP1AP78559 2803 aaPredicted RBP11.33□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ITPR3Q14573 2671 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CCDC189A1A4V9 331 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 UBXN8O00124 270 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 KLK8O60259 260 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SUSD5O60279 629 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CDC40O60508 579 aaKnown RBP eCLIP11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MSX1P28360 303 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CRABP2P29373 138 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NUP107P57740 925 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TLE4Q04727 773 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PMPCAQ10713 525 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CALCOCO2Q13137 446 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SLAMF1Q13291 335 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 AP5B1Q2VPB7 878 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 GRHL2Q6ISB3 625 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PAOXQ6QHF9 649 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 OPN5Q6U736 354 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ZDHHC24Q6UX98 284 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SPNS3Q6ZMD2 512 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MEX3BQ6ZN04 569 aaKnown RBP11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CEP128Q6ZU80 1094 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 C9orf40Q8IXQ3 194 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 DMRTC2Q8IXT2 367 aaPredicted RBP11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ZCCHC7Q8N3Z6 543 aaKnown RBP11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RNF175Q8N4F7 328 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TMEM251Q8N6I4 163 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 HUS1BQ8NHY5 278 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FBXO25Q8TCJ0 367 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RND1Q92730 232 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NXNL1Q96CM4 212 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CMTM7Q96FZ5 175 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 GPR78Q96P69 363 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SORBS1Q9BX66 1292 aaKnown RBP11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 UCK2Q9BZX2 261 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 OR51B5Q9H339 312 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SEMA4BQ9NPR2 832 aaPredicted RBP11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PNPLA3Q9NST1 481 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RYDENQ9NUL5 291 aaKnown RBP11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TXNDC16Q9P2K2 825 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TNFRSF10DQ9UBN6 386 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ATG4BQ9Y4P1 393 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FAM215AQ9Y5M1 114 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 LIPGQ9Y5X9 500 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MPDZO75970 2070 aa11.32□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FAM166BA8MTA8 275 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NPIPA2E9PIF3 369 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NPIPA3F8WFD2 350 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 H0YIV9 168 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 HRKO00198 91 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PLPP1O14494 284 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 AQP7O14520 342 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PROM1O43490 865 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 HOXD4P09016 255 aaPredicted RBP11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 LTA4HP09960 611 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CCL3P10147 92 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CPN2P22792 545 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 BSGP35613 385 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MAGEA4P43358 317 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MAGEA5P43359 124 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PLTPP55058 493 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 HNRNPH2P55795 449 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ID2Q02363 134 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CAV1Q03135 178 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NAB1Q13506 487 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 LIPJQ5W064 366 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 GK5Q6ZS86 529 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ACAD11Q709F0 780 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ZNF572Q7Z3I7 529 aaPredicted RBP11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 CCDC91Q7Z6B0 441 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 GPR180Q86V85 440 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 OR4N5Q8IXE1 308 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FAM109AQ8N4B1 249 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SLC15A4Q8N697 577 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PPM1NQ8N819 430 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FBF1Q8TES7 1133 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 PAQR8Q8TEZ7 354 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TANKQ92844 425 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RGMAQ96B86 450 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 NTNG2Q96CW9 530 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 FBXL20Q96IG2 436 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TTYH2Q9BSA4 534 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 RPF2Q9H7B2 306 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 DDX31Q9H8H2 851 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 DMRT3Q9NQL9 472 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 SACM1LQ9NTJ5 587 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 MS4A12Q9NXJ0 267 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 TUBA8Q9NY65 449 aaPredicted RBP11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 OPTCQ9UBM4 332 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ASB4Q9Y574 426 aa11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 ANKHD1Q8IWZ3 2542 aaKnown RBP11.31□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 EXPH5Q8NEV8 1989 aa11.3□□□□□ -0.6
MSH5-SAPCD1-205ENST00000476085 A0A0A6YYD5 115 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms