RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ENTPD4Q9Y227 616 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 KLF13Q9Y2Y9 288 aaPredicted RBP13.08□□□□□ -0.32
UPF3A-204ENST00000475218 PCDHGA11Q9Y5H2 935 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 CSMD1Q96PZ7 3565 aa13.08□□□□□ -0.32
UPF3A-204ENST00000475218 A0A1W2PR48 441 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 PROM1O43490 865 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 RNF4P78317 190 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 FOLH1Q04609 750 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 ART3Q13508 389 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 SP5Q6BEB4 398 aaPredicted RBP13.07□□□□□ -0.32
UPF3A-204ENST00000475218 METTL2BQ6P1Q9 378 aaKnown RBP13.07□□□□□ -0.32
UPF3A-204ENST00000475218 MRGPRGQ86SM5 289 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 DOLPP1Q86YN1 238 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 TICAM1Q8IUC6 712 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 LURAP1LQ8IV03 231 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 C9orf40Q8IXQ3 194 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 FAM98AQ8NCA5 519 aaKnown RBP13.07□□□□□ -0.32
UPF3A-204ENST00000475218 PHF21BQ96EK2 531 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 SENP5Q96HI0 755 aaPredicted RBP13.07□□□□□ -0.32
UPF3A-204ENST00000475218 MAGED4Q96JG8 741 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 CCDC77Q9BR77 488 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 RPF2Q9H7B2 306 aaKnown RBP13.07□□□□□ -0.32
UPF3A-204ENST00000475218 NOL11Q9H8H0 719 aaKnown RBP13.07□□□□□ -0.32
UPF3A-204ENST00000475218 DDX31Q9H8H2 851 aaKnown RBP13.07□□□□□ -0.32
UPF3A-204ENST00000475218 PLSCR2Q9NRY7 297 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 MEMO1Q9Y316 297 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 ANGPTL3Q9Y5C1 460 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 OTOGQ6ZRI0 2925 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 MYO9AB2RTY4 2548 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 CSMD2Q7Z408 3487 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 PRSS44E7EML9 344 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 FOXE1O00358 373 aaPredicted RBP13.07□□□□□ -0.32
UPF3A-204ENST00000475218 PPP6CO00743 305 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 HS6ST1O60243 411 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 GBAP04062 536 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 CLPSP04118 112 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 INHBAP08476 426 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 STT3AP46977 705 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 CUL3Q13618 768 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 KLC3Q6P597 504 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 LYPD8Q6UX82 237 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 IL20RBQ6UXL0 311 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 C3P1Q6ZMU1 363 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 GHDCQ8N2G8 530 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 ZNF808Q8N4W9 903 aaPredicted RBP13.07□□□□□ -0.32
UPF3A-204ENST00000475218 POGLUT1Q8NBL1 392 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 PSD4Q8NDX1 1056 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 MYRIPQ8NFW9 859 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 OR52N2Q8NGI0 321 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 OR8K3Q8NH51 312 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 SCYL1Q96KG9 808 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 DMRTA2Q96SC8 542 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 PSD3Q9NYI0 1048 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 ZNF180Q9UJW8 692 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 PPT2Q9UMR5 302 aa13.07□□□□□ -0.32
UPF3A-204ENST00000475218 TNPO3Q9Y5L0 923 aaKnown RBP13.07□□□□□ -0.32
UPF3A-204ENST00000475218 ZNF407Q9C0G0 2248 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 SYNDIG1LA6NDD5 238 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 GLOD5A6NK44 160 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 TRIM49D1C9J1S8 452 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 POC1B-GALNT4F8VUJ3 575 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 STX16-NPEPL1H3BU86 382 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 STX16O14662 325 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 NADKO95544 446 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-204ENST00000475218 CTAGE8P0CG41 777 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 PTX3P26022 381 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-204ENST00000475218 RAP1GDS1P52306 607 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 ARFIP1P53367 373 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 ZNF750Q32MQ0 723 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 GLE1Q53GS7 698 aaKnown RBP13.06□□□□□ -0.32
UPF3A-204ENST00000475218 ADGRD1Q6QNK2 874 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 BNC2Q6ZN30 1099 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-204ENST00000475218 CTAGE4Q8IX94 777 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 AGAP11Q8TF27 550 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 ASB15Q8WXK1 588 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 NTMT1Q9BV86 223 aa13.06□□□□□ -0.32
UPF3A-204ENST00000475218 SUCOQ9UBS9 1254 aaKnown RBP13.06□□□□□ -0.32
UPF3A-204ENST00000475218 KLF2Q9Y5W3 355 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-204ENST00000475218 A0A1B0GTH9 108 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 ARHGAP10A1A4S6 786 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 A8MVJ9 347 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 G3V3Y1 287 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 KLRC4-KLRK1H3BQV0 150 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 CLDN9O95484 217 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 AIFM1O95831 613 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 RPS17P08708 135 aaKnown RBP13.05□□□□□ -0.32
UPF3A-204ENST00000475218 RBP1P09455 135 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 FAM58BPP0C7Q3 252 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 TNNI3P19429 210 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 SERPINB9P50453 376 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 RPTNQ6XPR3 784 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 CEP128Q6ZU80 1094 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 GPALPP1Q8IXQ4 340 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 SLC34A3Q8N130 599 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 LRRN4CLQ8ND94 238 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 OR2M7Q8NG81 312 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 TANKQ92844 425 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 MARVELD3Q96A59 401 aa13.05□□□□□ -0.32
UPF3A-204ENST00000475218 MTFMTQ96DP5 389 aaKnown RBP13.05□□□□□ -0.32
UPF3A-204ENST00000475218 FBXL20Q96IG2 436 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms