RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 TRIM31Q9BZY9 425 aa20.87■□□□□ 0.93
USP4-208ENST00000464168 DNAJB12Q9NXW2 375 aaKnown RBP20.87■□□□□ 0.93
USP4-208ENST00000464168 CD274Q9NZQ7 290 aa20.87■□□□□ 0.93
USP4-208ENST00000464168 SPRR3Q9UBC9 169 aa20.87■□□□□ 0.93
USP4-208ENST00000464168 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.87■□□□□ 0.93
USP4-208ENST00000464168 TRGV5A0A0B4J1U4 118 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 CXorf49A8MYA2 514 aaPredicted RBP20.86■□□□□ 0.93
USP4-208ENST00000464168 FGF17O60258 216 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 CTAG2O75638 210 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 SCELO95171 688 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 IGKV3-11P04433 115 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 ILF2Q12905 390 aaKnown RBP20.86■□□□□ 0.93
USP4-208ENST00000464168 CBLBQ13191 982 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 E2F2Q14209 437 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 TMEM35AQ53FP2 167 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 SLC22A10Q63ZE4 541 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 ARSKQ6UWY0 536 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 LYPD8Q6UX82 237 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 DGAT2L6Q6ZPD8 337 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 C9orf40Q8IXQ3 194 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 PDPRQ8NCN5 879 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 NUBPLQ8TB37 319 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 TSPAN17Q96FV3 270 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 POM121Q96HA1 1249 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 CXXC4Q9H2H0 198 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 ALKBH4Q9NXW9 302 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 SPACA6W5XKT8 324 aa20.86■□□□□ 0.93
USP4-208ENST00000464168 HRKO00198 91 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 CCNT2O60583 730 aaKnown RBP20.85■□□□□ 0.93
USP4-208ENST00000464168 SH3BGRLO75368 114 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 NADKO95544 446 aaPredicted RBP20.85■□□□□ 0.93
USP4-208ENST00000464168 RFPL3SP0C7P2 107 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 CD99P14209 185 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 COX7A2P14406 83 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 CPN2P22792 545 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 STT3AP46977 705 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 ATP6V0D1P61421 351 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 AP5B1Q2VPB7 878 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 CAPN12Q6ZSI9 719 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 CREG2Q8IUH2 290 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 ZBED8Q8IZ13 594 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 PAQR8Q8TEZ7 354 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 PPWD1Q96BP3 646 aaKnown RBP20.85■□□□□ 0.93
USP4-208ENST00000464168 FOXC2Q99958 501 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 CD244Q9BZW8 370 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 EXO5Q9H790 373 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 PROK2Q9HC23 129 aa20.85■□□□□ 0.93
USP4-208ENST00000464168 TGFB1P01137 390 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 GABRA1P14867 456 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 FOLH1Q04609 750 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 SNTB1Q13884 538 aaKnown RBP20.84■□□□□ 0.93
USP4-208ENST00000464168 RIPPLY2Q5TAB7 128 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 CHSY3Q70JA7 882 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 WDR53Q7Z5U6 358 aaPredicted RBP20.84■□□□□ 0.93
USP4-208ENST00000464168 LAS2Q8IYD9 372 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 ZZZ3Q8IYH5 903 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 BBOF1Q8ND07 529 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 C7orf57Q8NEG2 295 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 SPACA9Q96E40 222 aaPredicted RBP20.84■□□□□ 0.93
USP4-208ENST00000464168 UBXN10Q96LJ8 280 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 DGAT2Q96PD7 388 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 SORBS1Q9BX66 1292 aaKnown RBP20.84■□□□□ 0.93
USP4-208ENST00000464168 PHACTR1Q9C0D0 580 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 LIME1Q9H400 295 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 ZNF703Q9H7S9 590 aaPredicted RBP20.84■□□□□ 0.93
USP4-208ENST00000464168 ZFP64Q9NPA5 681 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 CCM2LQ9NUG4 571 aaPredicted RBP20.84■□□□□ 0.93
USP4-208ENST00000464168 ZNF358Q9NW07 568 aa20.84■□□□□ 0.93
USP4-208ENST00000464168 TRMT1Q9NXH9 659 aaKnown RBP20.84■□□□□ 0.93
USP4-208ENST00000464168 FAM221AA4D161 298 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 FAM47E-STBD1D6RA91 191 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 SAP18O00422 153 aaKnown RBP20.83■□□□□ 0.93
USP4-208ENST00000464168 ZSCAN12O43309 604 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 SSR2P43308 183 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 RPL21P46778 160 aaKnown RBP20.83■□□□□ 0.93
USP4-208ENST00000464168 SLAMF1Q13291 335 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 PRAMEF20Q5VT98 475 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 LRRC25Q8N386 305 aaPredicted RBP20.83■□□□□ 0.93
USP4-208ENST00000464168 SLC15A4Q8N697 577 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 OR7G3Q8NG95 312 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 SLC22A8Q8TCC7 542 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 NINJ1Q92982 152 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 UBE2E3Q969T4 207 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 RBM18Q96H35 190 aaKnown RBP20.83■□□□□ 0.93
USP4-208ENST00000464168 KRT12Q99456 494 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 GPR22Q99680 433 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 POLDIP3Q9BY77 421 aaKnown RBP20.83■□□□□ 0.93
USP4-208ENST00000464168 RPF2Q9H7B2 306 aaKnown RBP20.83■□□□□ 0.93
USP4-208ENST00000464168 RNF112Q9ULX5 631 aa20.83■□□□□ 0.93
USP4-208ENST00000464168 FLNAP21333 2647 aaKnown RBP20.82■□□□□ 0.92
USP4-208ENST00000464168 LRRC3CA6NJW4 275 aa20.82■□□□□ 0.92
USP4-208ENST00000464168 EFCAB8A8MWE9 144 aa20.82■□□□□ 0.92
USP4-208ENST00000464168 PCNAP12004 261 aa20.82■□□□□ 0.92
USP4-208ENST00000464168 STMN1P16949 149 aa20.82■□□□□ 0.92
USP4-208ENST00000464168 SSTR1P30872 391 aa20.82■□□□□ 0.92
USP4-208ENST00000464168 GMPRP36959 345 aa20.82■□□□□ 0.92
USP4-208ENST00000464168 KCNJ2P63252 427 aa20.82■□□□□ 0.92
USP4-208ENST00000464168 PCDH1Q08174 1060 aa20.82■□□□□ 0.92
USP4-208ENST00000464168 ZKSCAN8Q15776 578 aaPredicted RBP20.82■□□□□ 0.92
USP4-208ENST00000464168 DEPDC1Q5TB30 811 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms