RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ZNF473	Q8WTR7	871 aa	Known RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	CCT6B	Q92526	530 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	KIAA1191	Q96A73	305 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	PTCD3	Q96EY7	689 aa	Known RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	KCNC2	Q96PR1	638 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	RHOJ	Q9H4E5	214 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	GSX1	Q9H4S2	264 aa	Predicted RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	DNAJC11	Q9NVH1	559 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	PTBP2	Q9UKA9	531 aa	Known RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	CBLC	Q9ULV8	474 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	KIAA1549	Q9HCM3	1950 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	FBN3	Q75N90	2809 aa		10.28	□□□□□ -0.76
PTPN7-204	ENST00000462815	TRGV5	A0A0B4J1U4	118 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	ANKDD1B	A6NHY2	528 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	SYT5	O00445	386 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZNF500	O60304	480 aa	Predicted RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	H2AFY	O75367	372 aa	Known RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	PIAS1	O75925	651 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	SEC31A	O94979	1220 aa	Known RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815		P04436	131 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	FBXO45	P0C2W1	286 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	CD1D	P15813	335 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	HIST1H1T	P22492	207 aa	Predicted RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	CEACAM8	P31997	349 aa	Predicted RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	STT3A	P46977	705 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	HSPA7	P48741	367 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	PCDH1	Q08174	1060 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	ASPH	Q12797	758 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	SLC10A1	Q14973	349 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	CEBPE	Q15744	281 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	TBCC	Q15814	346 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	WLS	Q5T9L3	541 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	CDC20B	Q86Y33	519 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	KRTAP1-3	Q8IUG1	177 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	ANKMY2	Q8IV38	441 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	LAS2	Q8IYD9	372 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	MMP21	Q8N119	569 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	PDIK1L	Q8N165	341 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	TCAIM	Q8N3R3	496 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	FBXW8	Q8N3Y1	598 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	BBOF1	Q8ND07	529 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	MYRIP	Q8NFW9	859 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	OR5L2	Q8NGL0	311 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	NEIL3	Q8TAT5	605 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	SARAF	Q96BY9	339 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	MBD6	Q96DN6	1003 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	SPACA9	Q96E40	222 aa	Predicted RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	SENP5	Q96HI0	755 aa	Predicted RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	VPS39	Q96JC1	886 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	ALPK1	Q96QP1	1244 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	TBCD	Q9BTW9	1192 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	EFCAB11	Q9BUY7	163 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	CAPS2	Q9BXY5	557 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZNF717	Q9BY31	904 aa	Predicted RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	POLDIP3	Q9BY77	421 aa	Known RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	SLC6A15	Q9H2J7	730 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	CLEC4M	Q9H2X3	399 aa	Predicted RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	CAB39L	Q9H9S4	337 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	ACKR4	Q9NPB9	350 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	B4GALT7	Q9UBV7	327 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	ACAD8	Q9UKU7	415 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	CNOT11	Q9UKZ1	510 aa	Known RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	MTO1	Q9Y2Z2	717 aa	Known RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZAN	Q9Y493	2812 aa		10.27	□□□□□ -0.77
PTPN7-204	ENST00000462815	ABCA2	Q9BZC7	2435 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	GOLGA6L10	A0A0M3HER8	536 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815		A6NNC1	897 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	CXorf49	A8MYA2	514 aa	Predicted RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	TRIM3	O75382	744 aa	Predicted RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	PRKRA	O75569	313 aa	Known RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	STK16	O75716	305 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	GABRA1	P14867	456 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	HPD	P32754	393 aa	Predicted RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	GMPR	P36959	345 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	WNT3	P56703	355 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	ADAM8	P78325	824 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	CRYZ	Q08257	329 aa	Known RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	STX4	Q12846	297 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	RCN2	Q14257	317 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZKSCAN8	Q15776	578 aa	Predicted RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	PDK4	Q16654	411 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	ACSF3	Q4G176	576 aa	Predicted RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	PRAMEF20	Q5VT98	475 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	FRA10AC1	Q70Z53	315 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	WDR53	Q7Z5U6	358 aa	Predicted RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	OR4N5	Q8IXE1	308 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	RNF175	Q8N4F7	328 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZNF441	Q8N8Z8	693 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	CHDH	Q8NE62	594 aa	Predicted RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	FBXO36	Q8NEA4	188 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	OR10G3	Q8NGC4	313 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	PPWD1	Q96BP3	646 aa	Known RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	FBXL20	Q96IG2	436 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	UBXN10	Q96LJ8	280 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	SORBS1	Q9BX66	1292 aa	Known RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	UBQLN3	Q9H347	655 aa		10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	COPS7B	Q9H9Q2	264 aa	Predicted RBP	10.26	□□□□□ -0.77
PTPN7-204	ENST00000462815	ZFP64	Q9NPA5	681 aa		10.26	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms