RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RIBC1Q8N443 379 aaPredicted RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 CCNYL1Q8N7R7 359 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 CDYL2Q8N8U2 506 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 CCDC63Q8NA47 563 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 TMEM178AQ8NBL3 297 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 ST6GALNAC3Q8NDV1 305 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 MDS2Q8NDY4 140 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 OR2W6PQ8NHA6 318 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 PRR7Q8TB68 274 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 AENQ8WTP8 325 aaKnown RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 THAP3Q8WTV1 239 aaPredicted RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 PTPMT1Q8WUK0 201 aaPredicted RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 RBM18Q96H35 190 aaKnown RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 SIGLEC12Q96PQ1 595 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 MRPL1Q9BYD6 325 aaKnown RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 OR8D2Q9GZM6 311 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 FARSBQ9NSD9 589 aaKnown RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 LRFN1Q9P244 771 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 ZNF225Q9UK10 706 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 ZNF223Q9UK11 482 aaPredicted RBP14.16□□□□□ -0.14
LIMS3-201ENST00000437679 PCDHGB6Q9Y5F9 930 aa14.16□□□□□ -0.14
LIMS3-201ENST00000437679 PTPN13Q12923 2485 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 A0A1W2PR48 441 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 CLEC18AA5D8T8 446 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 CCDC151A5D8V7 595 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 MANBAO00462 879 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 PRKRAO75569 313 aaKnown RBP14.15□□□□□ -0.14
LIMS3-201ENST00000437679 CRYABP02511 175 aaKnown RBP14.15□□□□□ -0.14
LIMS3-201ENST00000437679 HLCSP50747 726 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 PKNOX1P55347 436 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 NAA20P61599 178 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 PLIN5Q00G26 463 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 CCNYL2Q5T2Q4 361 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 CLEC18BQ6UXF7 455 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 HSDL2Q6YN16 418 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 C4orf33Q8N1A6 199 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 ARMC10Q8N2F6 343 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 TMEM156Q8N614 296 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 CLEC18CQ8NCF0 446 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 DNAJB8Q8NHS0 232 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 RDH11Q8TC12 318 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 METTL6Q8TCB7 284 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 SLC2A12Q8TD20 617 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 CAVIN3Q969G5 261 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 TAAR6Q96RI8 345 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 PELOQ9BRX2 385 aaKnown RBP14.15□□□□□ -0.14
LIMS3-201ENST00000437679 KLHL1Q9NR64 748 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 COPS7AQ9UBW8 275 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 MID2Q9UJV3 735 aa14.15□□□□□ -0.14
LIMS3-201ENST00000437679 USP9XQ93008 2570 aaPredicted RBP14.15□□□□□ -0.14
LIMS3-201ENST00000437679 GLOD5A6NK44 160 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 G3V2L1 256 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 OR10H2O60403 315 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 PLIN3O60664 434 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 GUCY1B2O75343 617 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 ULK1O75385 1050 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 ITGA10O75578 1167 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 NEURL1O76050 574 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 AGFG2O95081 481 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 GPR75O95800 540 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 AIFM1O95831 613 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 ENO1P06733 434 aaKnown RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 SP1P08047 785 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 HSD3B1P14060 373 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 ALOX15P16050 662 aaPredicted RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 HSD3B2P26439 372 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 TRHRP34981 398 aaPredicted RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 SLC18A2Q05940 514 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 SRSF1Q07955 248 aaKnown RBP eCLIP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 CFAP157Q5JU67 520 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 ZNF468Q5VIY5 522 aaPredicted RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 OR52E8Q6IFG1 317 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 SLC25A25Q6KCM7 469 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 ST13P4Q8IZP2 240 aaPredicted RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 FAM98AQ8NCA5 519 aaKnown RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 NR4A3Q92570 626 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 TMEM125Q96AQ2 219 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 SCMH1Q96GD3 660 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 ART5Q96L15 291 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 SLX1AQ9BQ83 275 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 ROPN1BQ9BZX4 212 aaPredicted RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 IQCGQ9H095 443 aaKnown RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 GSTO2Q9H4Y5 243 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 TRIM45Q9H8W5 580 aaPredicted RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 ROPN1Q9HAT0 212 aaPredicted RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 VPS29Q9UBQ0 182 aa14.14□□□□□ -0.15
LIMS3-201ENST00000437679 YARS2Q9Y2Z4 477 aaKnown RBP14.14□□□□□ -0.15
LIMS3-201ENST00000437679 ASH1LQ9NR48 2969 aaKnown RBP14.13□□□□□ -0.15
LIMS3-201ENST00000437679 H3BQF6 201 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 PRKNO60260 465 aaPredicted RBP14.13□□□□□ -0.15
LIMS3-201ENST00000437679 SLC25A12O75746 678 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 ESRRBO95718 433 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 DDAH2O95865 285 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 CPA3P15088 417 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 SSR4P51571 173 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 MAPK12P53778 367 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 DNAJB13P59910 316 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 CSTF3Q12996 717 aaKnown RBP14.13□□□□□ -0.15
LIMS3-201ENST00000437679 MAPKAPK3Q16644 382 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 ERCC6LQ2NKX8 1250 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 225 ms