RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 TRAPPC6BQ86SZ2 158 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 FAM72BQ86X60 149 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 PQLC3Q8N755 202 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 IGSF8Q969P0 613 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 C12orf43Q96C57 262 aaKnown RBP14.77□□□□□ -0.04
PTPRF-206ENST00000429895 PEX11GQ96HA9 241 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 NPY6RQ99463 290 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 RMI1Q9H9A7 625 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 PEX14O75381 377 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 ATE1O95260 518 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 CD3GP09693 182 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 AK4P27144 223 aaPredicted RBP14.77□□□□□ -0.04
PTPRF-206ENST00000429895 TBPL1P62380 186 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 EIF5AL1Q6IS14 154 aaKnown RBP14.77□□□□□ -0.04
PTPRF-206ENST00000429895 PLD6Q8N2A8 252 aaKnown RBP14.77□□□□□ -0.04
PTPRF-206ENST00000429895 DPH7Q9BTV6 452 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 KCNK13Q9HB14 408 aa14.77□□□□□ -0.04
PTPRF-206ENST00000429895 YARS2Q9Y2Z4 477 aaKnown RBP14.77□□□□□ -0.04
PTPRF-206ENST00000429895 A8MV72 311 aaPredicted RBP14.77□□□□□ -0.05
PTPRF-206ENST00000429895 DAZLQ92904 295 aaKnown RBP14.77□□□□□ -0.05
PTPRF-206ENST00000429895 FBXL8Q96CD0 374 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 KCNN3Q9UGI6 736 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 A0A0G2JPF8 293 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 HNRNPCL3B7ZW38 293 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 HNRNPCL4P0DMR1 293 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 PROKR1Q8TCW9 393 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 NANSQ9NR45 359 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 MROH1Q8NDA8 1641 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 CLIC3O95833 236 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 ELK4P28324 431 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 GJA8P48165 433 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 KCNC4Q03721 635 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 MALLQ13021 153 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 ZBED5Q49AG3 693 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 TMEM236Q5W0B7 351 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 NR4A3Q92570 626 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 MROQ9BYG7 248 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 ICKQ9UPZ9 632 aa14.77□□□□□ -0.05
PTPRF-206ENST00000429895 EXOC3L2Q2M3D2 409 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 UBE2UQ5VVX9 321 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 LIPJQ5W064 366 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 SAMD12Q8N8I0 201 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 SPRYD4Q8WW59 207 aaPredicted RBP14.76□□□□□ -0.05
PTPRF-206ENST00000429895 OR5P2Q8WZ92 322 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 DIO2Q92813 273 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 NAA11Q9BSU3 229 aaPredicted RBP14.76□□□□□ -0.05
PTPRF-206ENST00000429895 HINT2Q9BX68 163 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 PSAT1Q9Y617 370 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 SLIT3O75094 1523 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 ZNF850A8MQ14 1090 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 CSF2P04141 144 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 PTGS2P35354 604 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 CRYZQ08257 329 aaKnown RBP14.76□□□□□ -0.05
PTPRF-206ENST00000429895 CATSPEREQ5SY80 951 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 GPR137CQ8N3F9 429 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 KCNJ9Q92806 393 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 LRRN3E7EW58 273 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 SOCS5O75159 536 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 FAM163BP0C2L3 166 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 VIPR2P41587 438 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 ZSWIM9Q86XI8 627 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 ZNF584Q8IVC4 421 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 LRRC25Q8N386 305 aaPredicted RBP14.76□□□□□ -0.05
PTPRF-206ENST00000429895 KLHL15Q96M94 604 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 LRRN3Q9H3W5 708 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 SIX4Q9UIU6 781 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 TBX10O75333 385 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 SOX30O94993 753 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 P04436 131 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 DIO3P55073 304 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 GID4Q8IVV7 300 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 OR6Q1Q8NGQ2 317 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 KCNN1Q92952 543 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 PRR11Q96HE9 360 aaPredicted RBP14.76□□□□□ -0.05
PTPRF-206ENST00000429895 PITX2Q99697 317 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 GJD2Q9UKL4 321 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 GGT3PA6NGU5 568 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 EMC8O43402 210 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 IFNA2P01563 188 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 HSD11B2P80365 405 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 HSD17B12Q53GQ0 312 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 LIPKQ5VXJ0 399 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 IGDCC3Q8IVU1 814 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 ZDHHC14Q8IZN3 488 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 PACRGLQ8N7B6 248 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 OR56A3Q8NH54 315 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 SLC30A2Q9BRI3 323 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 CREBZFQ9NS37 354 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 RARRES3Q9UL19 164 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 OARD1Q9Y530 152 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 PCDHGB6Q9Y5F9 930 aa14.76□□□□□ -0.05
PTPRF-206ENST00000429895 A6NL46 340 aa14.75□□□□□ -0.05
PTPRF-206ENST00000429895 JUPP14923 745 aa14.75□□□□□ -0.05
PTPRF-206ENST00000429895 DEFB110Q30KQ9 67 aa14.75□□□□□ -0.05
PTPRF-206ENST00000429895 CDNFQ49AH0 187 aa14.75□□□□□ -0.05
PTPRF-206ENST00000429895 KCTD18Q6PI47 426 aaPredicted RBP14.75□□□□□ -0.05
PTPRF-206ENST00000429895 ALDH16A1Q8IZ83 802 aa14.75□□□□□ -0.05
PTPRF-206ENST00000429895 PTGDR2Q9Y5Y4 395 aa14.75□□□□□ -0.05
PTPRF-206ENST00000429895 GSTM2P28161 218 aa14.75□□□□□ -0.05
PTPRF-206ENST00000429895 LBX1P52954 281 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms