RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 HBA1P69905 142 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ACSM2AQ08AH3 577 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 COL28A1Q2UY09 1125 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 CRTC2Q53ET0 693 aaPredicted RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 CLLU1Q5K131 121 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 PRAMEF19Q5SWL8 479 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ACSM2BQ68CK6 577 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 BRAT1Q6PJG6 821 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 LINGO4Q6UY18 593 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 BMP8AQ7Z5Y6 402 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 TLK2Q86UE8 772 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 TAGAPQ8N103 731 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 TCEANCQ8N8B7 351 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 DTX3Q8N9I9 347 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 GOT1L1Q8NHS2 421 aaPredicted RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 MTERF1Q99551 399 aaKnown RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 SLC12A9Q9BXP2 914 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 RANBP3Q9H6Z4 567 aaPredicted RBP10.2□□□□□ -0.78
USP54-204ENST00000422491 SYNDIG1Q9H7V2 258 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 NT5DC2Q9H857 520 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 DNAJC11Q9NVH1 559 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 SLCO1C1Q9NYB5 712 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 PCDHB8Q9UN66 801 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 PCDHB7Q9Y5E2 793 aa10.2□□□□□ -0.78
USP54-204ENST00000422491 ZNF106Q9H2Y7 1883 aaKnown RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 TRBC2A0A5B9 178 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 SMAD6O43541 496 aaKnown RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 ACSL4O60488 711 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 RAB36O95755 333 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 ALDH1A1P00352 501 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 FGF9P31371 208 aaPredicted RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 GSTM5P46439 218 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 BDKRB1P46663 353 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 CLCNKAP51800 687 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 LIM2P55344 173 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 WNT4P56705 351 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 WDR5P61964 334 aaKnown RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 CTAG1AP78358 180 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 CYP4F8P98187 520 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 CDK6Q00534 326 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 FABP5Q01469 135 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 TPBGQ13641 420 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 GALEQ14376 348 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 LRRC32Q14392 662 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 MBTPS1Q14703 1052 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 HEPACAMQ14CZ8 416 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 SEC23BQ15437 767 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 GRK1Q15835 563 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 GPR162Q16538 588 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 ZNF385BQ569K4 471 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 CD200R1LQ6Q8B3 271 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 CASP12Q6UXS9 341 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 PRSS42Q7Z5A4 293 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 DEFB132Q7Z7B7 95 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 HJURPQ8NCD3 748 aaPredicted RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 OR11H7Q8NGC8 314 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 PHF21AQ96BD5 680 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 WACQ9BTA9 647 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 LHX3Q9UBR4 397 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 SRRDQ9UH36 339 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 CRLS1Q9UJA2 301 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 EXO1Q9UQ84 846 aaKnown RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 NCKAP1Q9Y2A7 1128 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 RWDD3Q9Y3V2 267 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 C2orf78A6NCI8 922 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 SLC30A4O14863 429 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 ETHE1O95571 254 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 IFNW1P05000 195 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 RHOCP08134 193 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 HOXD4P09016 255 aaPredicted RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 HLA-FP30511 346 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 CCR7P32248 378 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 OPRD1P41143 372 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 ASMTP46597 345 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 HNMTP50135 292 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 SGSHP51688 502 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 XKP51811 444 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 GAS1P54826 345 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 SRP54P61011 504 aaKnown RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 ZNF33BQ06732 778 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 MRPL58Q14197 206 aaKnown RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 PUM1Q14671 1186 aaKnown RBP eCLIP10.19□□□□□ -0.78
USP54-204ENST00000422491 PLA1AQ53H76 456 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 OR2G6Q5TZ20 316 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 MFSD14CQ5VZR4 134 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 BICRALQ6AI39 1079 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 FAM92BQ6ZTR7 304 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 PLEKHM3Q6ZWE6 761 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 GPAT4Q86UL3 456 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 CDH24Q86UP0 819 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 DNAJC5GQ8N7S2 189 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 APOBEC4Q8WW27 367 aaKnown RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 SLC35A5Q9BS91 424 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 SYT17Q9BSW7 474 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 PRR14Q9BWN1 585 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 RETREG1Q9H6L5 497 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 ZFYVE1Q9HBF4 777 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 EMC7Q9NPA0 242 aa10.19□□□□□ -0.78
USP54-204ENST00000422491 CUEDC1Q9NWM3 386 aaPredicted RBP10.19□□□□□ -0.78
USP54-204ENST00000422491 ZNF224Q9NZL3 707 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms