RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 GOLGA6L10A0A0M3HER8 536 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 TRABD2BA6NFA1 517 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 GRID2O43424 1007 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 PROP1O75360 226 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 CSO75390 466 aaKnown RBP6.08□□□□□ -1.44
USP40-202ENST00000409945 CDK14O94921 469 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 TOP3BO95985 862 aaKnown RBP6.08□□□□□ -1.44
USP40-202ENST00000409945 IFNB1P01574 187 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 ATP1A1P05023 1023 aaKnown RBP6.08□□□□□ -1.44
USP40-202ENST00000409945 GM2AP17900 193 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 MSH3P20585 1137 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 PSMB4P28070 264 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 SARNPP82979 210 aaKnown RBP6.08□□□□□ -1.44
USP40-202ENST00000409945 TMEM115Q12893 351 aaPredicted RBP6.08□□□□□ -1.44
USP40-202ENST00000409945 LRRC8EQ6NSJ5 796 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 HMBOX1Q6NT76 420 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 SLC2A7Q6PXP3 512 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 KDELC1Q6UW63 502 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 LRIG3Q6UXM1 1119 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 PPP1R21Q6ZMI0 780 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 SLC9B2Q86UD5 537 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 SLC13A5Q86YT5 568 aaPredicted RBP6.08□□□□□ -1.44
USP40-202ENST00000409945 CCDC110Q8TBZ0 833 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 TMEM159Q96B96 161 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 COX14Q96I36 57 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 VPS35Q96QK1 796 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 IFT27Q9BW83 186 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 OR2AG1Q9H205 316 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 OSGEPL1Q9H4B0 414 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 ZNF446Q9NWS9 450 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 TAS2R10Q9NYW0 307 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 PAK5Q9P286 719 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 RNF14Q9UBS8 474 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 SNX12Q9UMY4 172 aa6.08□□□□□ -1.44
USP40-202ENST00000409945 KIR2DS5A0A0G2JLQ3 304 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 A0A0G2JNG1 304 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 FAM149AA5PLN7 773 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 FOXO6A8MYZ6 492 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 KIR2DS3K7RE56 304 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 RPLP0P05388 317 aaKnown RBP6.07□□□□□ -1.44
USP40-202ENST00000409945 GIMD1P0DJR0 217 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 IDSP22304 550 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 CBX1P83916 185 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 PMPCAQ10713 525 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 CDH17Q12864 832 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 KIR2DS5Q14953 304 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 PYCR3Q53H96 274 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 AADACL2Q6P093 401 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 KRT77Q7Z794 578 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 PIM3Q86V86 326 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 ADGRG3Q86Y34 549 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 TRAPPC5Q8IUR0 188 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 CADM3Q8N126 398 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 GPR26Q8NDV2 337 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 OR4N2Q8NGD1 307 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 OR10G6Q8NH81 332 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 WDR36Q8NI36 951 aaKnown RBP6.07□□□□□ -1.44
USP40-202ENST00000409945 OXNAD1Q96HP4 312 aaPredicted RBP6.07□□□□□ -1.44
USP40-202ENST00000409945 FAM118BQ9BPY3 351 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 TMEM121Q9BTD3 319 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 LRRN3Q9H3W5 708 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 ANKZF1Q9H8Y5 726 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 POLR1BQ9H9Y6 1135 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 BPIFA1Q9NP55 256 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 THSD1Q9NS62 852 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 CRLS1Q9UJA2 301 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 ANAPC5Q9UJX4 755 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 DHDHQ9UQ10 334 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 CLDN16Q9Y5I7 305 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 KNTC1P50748 2209 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 TRBV5-3A0A0A0MS03 114 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 PDZK1P1A8MUH7 402 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 PFDN6O15212 129 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 LIASO43766 372 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 DUX1O43812 170 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 CPNE6O95741 557 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 AP2A1O95782 977 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 AGTP01019 485 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 FGGP02679 453 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 TFEBP19484 476 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 ALDH4A1P30038 563 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 ZNF91Q05481 1191 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 GABPB1Q06547 395 aaPredicted RBP6.07□□□□□ -1.44
USP40-202ENST00000409945 GPS2Q13227 327 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 CCNG2Q16589 344 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 ISXQ2M1V0 245 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 ODF3L2Q3SX64 289 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 GPR33Q49SQ1 333 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 VWA5B1Q5TIE3 1220 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 FAM151BQ6UXP7 276 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 NLRP9Q7RTR0 991 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 PRSS45Q7RTY3 260 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 NOXA1Q86UR1 476 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 GALNT16Q8N428 558 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 Q8N9G6 341 aaPredicted RBP6.07□□□□□ -1.44
USP40-202ENST00000409945 FAM47BQ8NA70 645 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 ZNF578Q96N58 590 aaPredicted RBP6.07□□□□□ -1.44
USP40-202ENST00000409945 SORCS2Q96PQ0 1159 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 FRG2BQ96QU4 278 aa6.07□□□□□ -1.44
USP40-202ENST00000409945 CMKLR1Q99788 373 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms