RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 EHD3Q9NZN3 535 aa24.05■■□□□ 1.44
C9orf40-201ENST00000376854 PDPK1O15530 556 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 TBX6O95947 436 aaPredicted RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 PRNPP04156 253 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 IGFBP1P08833 259 aaPredicted RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 CISD3P0C7P0 127 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 C6P13671 934 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 SNRPGP62308 76 aaKnown RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 KRR1Q13601 381 aaKnown RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 DCST1Q5T197 706 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 KHDRBS2Q5VWX1 349 aaKnown RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 TCTN3Q6NUS6 607 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 RAD51AP1Q96B01 352 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 TM4SF18Q96CE8 201 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 PPP1R16AQ96I34 528 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 LRRC3BQ96PB8 259 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 RSPO3Q9BXY4 272 aaPredicted RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 ZNF717Q9BY31 904 aaPredicted RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 FZD3Q9NPG1 666 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 PRKAB1Q9Y478 270 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 MN1Q10571 1320 aaPredicted RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 CTDSP2O14595 271 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 KMOO15229 486 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 LZTS3O60299 673 aaPredicted RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 OR10H3O60404 316 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 MMP20O60882 483 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 SEMA7AO75326 666 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 ELAVL4P26378 380 aaKnown RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 HTRA4P83105 476 aaPredicted RBP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 KHDRBS1Q07666 443 aaKnown RBP eCLIP24.04■■□□□ 1.44
C9orf40-201ENST00000376854 HSPB3Q12988 150 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 ILKQ13418 452 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 DHCR24Q15392 516 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 SPDYE7PQ495Y7 208 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 TCEAL5Q5H9L2 206 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 FAM92BQ6ZTR7 304 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 SCAIQ8N9R8 606 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 ARRDC3Q96B67 414 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 F2RL3Q96RI0 385 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 DNAJC27Q9NZQ0 273 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 MGAT4BQ9UQ53 548 aa24.04■■□□□ 1.44
C9orf40-201ENST00000376854 SNX4O95219 450 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 EPCAMP16422 314 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 CSTF2P33240 577 aaKnown RBP eCLIP24.03■■□□□ 1.44
C9orf40-201ENST00000376854 VASPP50552 380 aaPredicted RBP24.03■■□□□ 1.44
C9orf40-201ENST00000376854 DEFA1P59665 94 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 DEFA3P59666 94 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 MESP2Q0VG99 397 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 DEF8Q6ZN54 512 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 ZNF765Q7L2R6 523 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 GDPD3Q7L5L3 318 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 SPRED2Q7Z698 418 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 VANGL1Q8TAA9 524 aaPredicted RBP24.03■■□□□ 1.44
C9orf40-201ENST00000376854 CEP19Q96LK0 163 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 OR52A5Q9H2C5 316 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 HHATLQ9HCP6 504 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 EXOSC4Q9NPD3 245 aaKnown RBP24.03■■□□□ 1.44
C9orf40-201ENST00000376854 CXXC1Q9P0U4 656 aaPredicted RBP24.03■■□□□ 1.44
C9orf40-201ENST00000376854 C5AR2Q9P296 337 aa24.03■■□□□ 1.44
C9orf40-201ENST00000376854 LOC110117498-PIK3R3F6TDL0 507 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 H3BN98 237 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 SCG5P05408 212 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 CKMT1AP12532 417 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 KELP23276 732 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 RHAGQ02094 409 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 SLX4IPQ5VYV7 408 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 CCBE1Q6UXH8 406 aaPredicted RBP24.02■■□□□ 1.44
C9orf40-201ENST00000376854 C6orf120Q7Z4R8 191 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 KLHL6Q8WZ60 621 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 PIK3R3Q92569 461 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 EFHD2Q96C19 240 aaPredicted RBP24.02■■□□□ 1.44
C9orf40-201ENST00000376854 CNPPD1Q9BV87 410 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 NEUROD4Q9HD90 331 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 TAC3Q9UHF0 121 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 GPR34Q9UPC5 381 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 FAAHO00519 579 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 PDE9AO76083 593 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 OXSR1O95747 527 aaPredicted RBP24.02■■□□□ 1.44
C9orf40-201ENST00000376854 H1F0P07305 194 aaKnown RBP24.02■■□□□ 1.44
C9orf40-201ENST00000376854 BSGP35613 385 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 SOX3P41225 446 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 GRASPQ7Z6J2 395 aaPredicted RBP24.02■■□□□ 1.44
C9orf40-201ENST00000376854 C17orf64Q86WR6 236 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 C12orf40Q86WS4 652 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 RBM45Q8IUH3 476 aaKnown RBP24.02■■□□□ 1.44
C9orf40-201ENST00000376854 SLC34A3Q8N130 599 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 NRTNQ99748 197 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 CRNNQ9UBG3 495 aaPredicted RBP24.02■■□□□ 1.44
C9orf40-201ENST00000376854 CLEC2DQ9UHP7 191 aa24.02■■□□□ 1.44
C9orf40-201ENST00000376854 LSM2Q9Y333 95 aaKnown RBP24.02■■□□□ 1.44
C9orf40-201ENST00000376854 PCYT1BQ9Y5K3 369 aaPredicted RBP24.02■■□□□ 1.44
C9orf40-201ENST00000376854 PDZK1P1A8MUH7 402 aa24.01■■□□□ 1.43
C9orf40-201ENST00000376854 ASNA1O43681 348 aa24.01■■□□□ 1.43
C9orf40-201ENST00000376854 SEMA3DO95025 777 aa24.01■■□□□ 1.43
C9orf40-201ENST00000376854 RB1P06400 928 aa24.01■■□□□ 1.43
C9orf40-201ENST00000376854 ITGB7P26010 798 aa24.01■■□□□ 1.43
C9orf40-201ENST00000376854 HOXD12P35452 270 aa24.01■■□□□ 1.43
C9orf40-201ENST00000376854 XKP51811 444 aa24.01■■□□□ 1.43
C9orf40-201ENST00000376854 CNTN1Q12860 1018 aa24.01■■□□□ 1.43
C9orf40-201ENST00000376854 HEPACAMQ14CZ8 416 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms