RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ZBTB20Q9HC78 741 aaPredicted RBP20.69■□□□□ 0.9
SHMT1-202ENST00000352886 PRDM8Q9NQV8 689 aa20.69■□□□□ 0.9
SHMT1-202ENST00000352886 LATO43561 262 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 AIREO43918 545 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 MFN2O95140 757 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 SERPIND1P05546 499 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 FCARP24071 287 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 FRKP42685 505 aaPredicted RBP20.68■□□□□ 0.9
SHMT1-202ENST00000352886 CDC42P60953 191 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 VITQ6UXI7 678 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 AMER3Q8N944 861 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 ZNF675Q8TD23 568 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 ZBED6CLQ96FA7 236 aaPredicted RBP20.68■□□□□ 0.9
SHMT1-202ENST00000352886 MS4A12Q9NXJ0 267 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 SERGEFQ9UGK8 458 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 ENOPH1Q9UHY7 261 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 OSGIN1Q9UJX0 560 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 TRBV4-1A0A0J9YWV2 114 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 ARRDC5A6NEK1 342 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 HMGN4O00479 90 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 BMP4P12644 408 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 DGKEP52429 567 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 CSNK1G2P78368 415 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 ST3GAL4Q11206 333 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 GPM6BQ13491 265 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 TP53BP2Q13625 1128 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 RUNX3Q13761 415 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 CST6Q15828 149 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 INAQ16352 499 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 ZNF770Q6IQ21 691 aaPredicted RBP20.68■□□□□ 0.9
SHMT1-202ENST00000352886 UBE3DQ7Z6J8 389 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 MFSD4AQ8N468 514 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 MAPKAP1Q9BPZ7 522 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 ARMC7Q9H6L4 198 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 NT5DC2Q9H857 520 aa20.68■□□□□ 0.9
SHMT1-202ENST00000352886 FUOMA2VDF0 154 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 GRXCR1A8MXD5 290 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 PPM1DO15297 605 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 ADORA3P0DMS8 318 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 DDX5P17844 614 aaKnown RBP20.67■□□□□ 0.9
SHMT1-202ENST00000352886 CHMP24386 653 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 SFSWAPQ12872 951 aaKnown RBP20.67■□□□□ 0.9
SHMT1-202ENST00000352886 MLF2Q15773 248 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-202ENST00000352886 ZNF513Q8N8E2 541 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-202ENST00000352886 INSM2Q96T92 566 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-202ENST00000352886 PITHD1Q9GZP4 211 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-202ENST00000352886 DCSTAMPQ9H295 470 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 XKR8Q9H6D3 395 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 FTSJ1Q9UET6 329 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 ACSL5Q9ULC5 683 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 ATG2BQ96BY7 2078 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 PAK4O96013 591 aaPredicted RBP20.67■□□□□ 0.9
SHMT1-202ENST00000352886 CA3P07451 260 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 GADD45AP24522 165 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 IRF4Q15306 451 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 MAPK11Q15759 364 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 C1QTNF12Q5T7M4 302 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 SZRD1Q7Z422 152 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 SNX29P2Q8IUI4 249 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 RAB42Q8N4Z0 105 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 KLK6Q92876 244 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 COL21A1Q96P44 957 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 TMEM165Q9HC07 324 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 IMP3Q9NV31 184 aaKnown RBP20.67■□□□□ 0.9
SHMT1-202ENST00000352886 DOLKQ9UPQ8 538 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 STON1Q9Y6Q2 735 aa20.67■□□□□ 0.9
SHMT1-202ENST00000352886 ATG2AQ2TAZ0 1938 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 UNC80Q8N2C7 3258 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 TRANK1O15050 2925 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 ZAR1LA6NP61 321 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 SEMA7AO75326 666 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 PTHP01270 115 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 POU1F1P28069 291 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 CCT3P49368 545 aaKnown RBP20.66■□□□□ 0.9
SHMT1-202ENST00000352886 CRISP1P54107 249 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 FRMPD2BQ6IN97 320 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 ZNF784Q8NCA9 323 aaPredicted RBP20.66■□□□□ 0.9
SHMT1-202ENST00000352886 B3GNT7Q8NFL0 401 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 TEFMQ96QE5 360 aaKnown RBP20.66■□□□□ 0.9
SHMT1-202ENST00000352886 C17orf62Q9BQA9 187 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 DAPK2Q9UIK4 370 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 REV3LO60673 3130 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 IGKV1-8A0A0C4DH67 115 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 ANHXE9PGG2 379 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 PDE9AO76083 593 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 TRIM16LQ309B1 348 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 LEXMQ3ZCV2 418 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 PERM1Q5SV97 790 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 OR4C11Q6IEV9 310 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 HDDC3Q8N4P3 179 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 VANGL1Q8TAA9 524 aaPredicted RBP20.66■□□□□ 0.9
SHMT1-202ENST00000352886 CHFRQ96EP1 664 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 SERHL2Q9H4I8 314 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 DDX31Q9H8H2 851 aaKnown RBP20.66■□□□□ 0.9
SHMT1-202ENST00000352886 SFXN1Q9H9B4 322 aa20.66■□□□□ 0.9
SHMT1-202ENST00000352886 CKAP5Q14008 2032 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 A0A1W2PP55 124 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 CNR2P34972 360 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 SSR2P43308 183 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 PRDX1Q06830 199 aaKnown RBP20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms