RNA–Protein interactions for RNA: ENST00000295718.6

PTPRN-201, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPRN, Length 3,784 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-201ENST00000295718 DUSP7Q16829 419 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 REEP3Q6NUK4 255 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 RSPO2Q6UXX9 243 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-201ENST00000295718 TRIM46Q7Z4K8 759 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 TMCO2Q7Z6W1 182 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-201ENST00000295718 PTOV1Q86YD1 416 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 CHST14Q8NCH0 376 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 TMEM19Q96HH6 336 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 ENAMQ9NRM1 1142 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 CDV3Q9UKY7 258 aaKnown RBP13.81□□□□□ -0.2
PTPRN-201ENST00000295718 NCKAP1Q9Y2A7 1128 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 ENPP4Q9Y6X5 453 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 PDPK1O15530 556 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 MAPK8P45983 427 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 AP2S1P53680 142 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-201ENST00000295718 IFITM2Q01629 132 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 FADDQ13158 208 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 ARSIQ5FYB1 569 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 LSRQ86X29 649 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-201ENST00000295718 LACC1Q8IV20 430 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 UBQLNLQ8IYU4 475 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 OR5D16Q8NGK9 328 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 CLIP3Q96DZ5 547 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 NANSQ9NR45 359 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 CNIH4Q9P003 139 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 HMX3A6NHT5 357 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 ANHXE9PGG2 379 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 OR1F1O43749 312 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 PRKACBP22694 351 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 LIMS2Q7Z4I7 341 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 TMEM173Q86WV6 379 aaPredicted RBP13.81□□□□□ -0.2
PTPRN-201ENST00000295718 KLBQ86Z14 1044 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 RASSF5Q8WWW0 418 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 NEIL2Q969S2 332 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 EPYCQ99645 322 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 TTLL2Q9BWV7 592 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 ARHGAP39Q9C0H5 1083 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 RDH8Q9NYR8 311 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 HCN2Q9UL51 889 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 ERVW-1Q9UQF0 538 aa13.81□□□□□ -0.2
PTPRN-201ENST00000295718 PDHA2P29803 388 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 AP1S2P56377 157 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 LMAN2Q12907 356 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 LARS2Q15031 903 aaKnown RBP13.8□□□□□ -0.2
PTPRN-201ENST00000295718 ZNF697Q5TEC3 545 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 LYPD8Q6UX82 237 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 NLRP8Q86W28 1048 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 OR52P1PQ8NH57 321 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 SLC7A6Q92536 515 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 EID2BQ96D98 161 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 F2RL3Q96RI0 385 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 ZNF226Q9NYT6 803 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 SNX11Q9Y5W9 270 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 COL11A1P12107 1806 aaPredicted RBP13.8□□□□□ -0.2
PTPRN-201ENST00000295718 CKAP5Q14008 2032 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 TRBV23OR9-2A0A075B6M9 112 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 A8MUA0 341 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 ARHGEF33A8MVX0 844 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 RGS8P57771 180 aaPredicted RBP13.8□□□□□ -0.2
PTPRN-201ENST00000295718 FAM205BPQ63HN1 556 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 ANKRD54Q6NXT1 300 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 RD3Q7Z3Z2 195 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 C17orf64Q86WR6 236 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 PLD4Q96BZ4 506 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 CDCP1Q9H5V8 836 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 C12orf4Q9NQ89 552 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 FAM183AA6NL82 134 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 LYRM1O43325 122 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 PCDH8O95206 1070 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 RB1P06400 928 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 ATF6P18850 670 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 SLC9A3P48764 834 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 CTBP2P56545 445 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 BICRALQ6AI39 1079 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.8□□□□□ -0.2
PTPRN-201ENST00000295718 KRT78Q8N1N4 520 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 OR6F1Q8NGZ6 308 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 SECISBP2Q96T21 854 aaKnown RBP13.8□□□□□ -0.2
PTPRN-201ENST00000295718 MACROD1Q9BQ69 325 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 TAC3Q9UHF0 121 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 YIPF1Q9Y548 306 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 ALG5Q9Y673 324 aa13.8□□□□□ -0.2
PTPRN-201ENST00000295718 TMEM202A6NGA9 273 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 FAM170BA6NMN3 283 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 TNFRSF10AO00220 468 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 PRKCAP17252 672 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 CXCR2P25025 360 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 PTX3P26022 381 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-201ENST00000295718 ERP29P30040 261 aaKnown RBP13.79□□□□□ -0.2
PTPRN-201ENST00000295718 CCND3P30281 292 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-201ENST00000295718 SMIM11AP58511 58 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 STX4Q12846 297 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 ZNF630Q2M218 657 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-201ENST00000295718 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.79□□□□□ -0.2
PTPRN-201ENST00000295718 PIAS4Q8N2W9 510 aaPredicted RBP13.79□□□□□ -0.2
PTPRN-201ENST00000295718 C10orf53Q8N6V4 93 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 OR4K5Q8NGD3 323 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 OR8J1Q8NGP2 316 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 APH1BQ8WW43 257 aa13.79□□□□□ -0.2
PTPRN-201ENST00000295718 DPF3Q92784 378 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms