RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 ZNF490Q9ULM2 529 aaPredicted RBP12.94□□□□□ -0.34
VMP1-209ENST00000588915 PSAT1Q9Y617 370 aa12.94□□□□□ -0.34
VMP1-209ENST00000588915 TAPBPO15533 448 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 CTAG2O75638 210 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 STK16O75716 305 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 CASP2P42575 452 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 DLX5P56178 289 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 ARL4CP56559 192 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 CBLBQ13191 982 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 E2F2Q14209 437 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 TBCCQ15814 346 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 HIST2H2ACQ16777 129 aaPredicted RBP12.93□□□□□ -0.34
VMP1-209ENST00000588915 C1orf185Q5T7R7 199 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 SLC22A10Q63ZE4 541 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 HIST2H2AA3Q6FI13 130 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 SULT1C3Q6IMI6 304 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 ARSKQ6UWY0 536 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 UBE2E3Q969T4 207 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 RUNDC3BQ96NL0 473 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 CSF3RQ99062 836 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 MCMBPQ9BTE3 642 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 LDAHQ9H6V9 325 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 ACKR4Q9NPB9 350 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 DNAJB12Q9NXW2 375 aaKnown RBP12.93□□□□□ -0.34
VMP1-209ENST00000588915 TUBA8Q9NY65 449 aaPredicted RBP12.93□□□□□ -0.34
VMP1-209ENST00000588915 SNX12Q9UMY4 172 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 ATG4BQ9Y4P1 393 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 LIPGQ9Y5X9 500 aa12.93□□□□□ -0.34
VMP1-209ENST00000588915 TRGV5A0A0B4J1U4 118 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 A0A0G2JMM0 328 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 A0A1W2PPB8 328 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 A0A1W2PRS3 328 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 KIR3DP1A8MWS1 328 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 SYT5O00445 386 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 DYRK3O43781 588 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 SCELO95171 688 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 WISP3O95389 354 aaPredicted RBP12.92□□□□□ -0.34
VMP1-209ENST00000588915 COX7A2P14406 83 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 SLC12A2P55011 1212 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 IGLV3-21P80748 117 aaPredicted RBP12.92□□□□□ -0.34
VMP1-209ENST00000588915 POU4F1Q01851 419 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 DOC2AQ14183 400 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 ZNF460Q14592 562 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 C18orf21Q32NC0 220 aaPredicted RBP12.92□□□□□ -0.34
VMP1-209ENST00000588915 TMEM35AQ53FP2 167 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 HP1BP3Q5SSJ5 553 aaPredicted RBP12.92□□□□□ -0.34
VMP1-209ENST00000588915 CHSY3Q70JA7 882 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 GPSM1Q86YR5 675 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 TGIF2LYQ8IUE0 185 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 ACOT4Q8N9L9 421 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 SLC22A8Q8TCC7 542 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 PAQR8Q8TEZ7 354 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 ZNF721Q8TF20 911 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 LRRC46Q96FV0 321 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 TSPAN17Q96FV3 270 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 ART5Q96L15 291 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 F2RL3Q96RI0 385 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 WDR83Q9BRX9 315 aaKnown RBP12.92□□□□□ -0.34
VMP1-209ENST00000588915 SH2D2AQ9NP31 389 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.92□□□□□ -0.34
VMP1-209ENST00000588915 MS4A12Q9NXJ0 267 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 WWOXQ9NZC7 414 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 CNIH4Q9P003 139 aa12.92□□□□□ -0.34
VMP1-209ENST00000588915 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.92□□□□□ -0.34
VMP1-209ENST00000588915 PRRC2AP48634 2157 aaKnown RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 ATP6AP2A0A1C7CYW4 349 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 HSPB2A8KAH6 182 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 E7ESA3 106 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 G3V3Y1 287 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 ZNF354AO60765 605 aaPredicted RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 PRAMEF4O60810 478 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 LDB3O75112 727 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 ATP6AP2O75787 350 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 ETHE1O95571 254 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 IGKV3-11P04433 115 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 CCL3P10147 92 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 HIST1H1TP22492 207 aaPredicted RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 ATP5A1P25705 553 aaKnown RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 SERPINB1P30740 379 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 ADH7P40394 386 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 DNASE1L1P49184 302 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 ATP6V0D1P61421 351 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 PCDH1Q08174 1060 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 HSPB2Q16082 182 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 PDK4Q16654 411 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 AP5B1Q2VPB7 878 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 ZNF791Q3KP31 576 aaPredicted RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 PRAMEF9Q5VWM5 478 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 ZNF793Q6ZN11 406 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 LIX1LQ8IVB5 337 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 SLC35F6Q8N357 371 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 FBXW8Q8N3Y1 598 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 ZNF321PQ8N8H1 164 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 PDPRQ8NCN5 879 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 ANKRD9Q96BM1 317 aaPredicted RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 RBM18Q96H35 190 aaKnown RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 SENP5Q96HI0 755 aaPredicted RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 CAPZA3Q96KX2 299 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 MAPKAP1Q9BPZ7 522 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 TMEM79Q9BSE2 394 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms