RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 MYO1GB0I1T2 1018 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 PPM1DO15297 605 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 ZSCAN9O15535 394 aaPredicted RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 PDE9AO76083 593 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 DNAJA1P31689 397 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 CCT3P49368 545 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 ITGA1P56199 1179 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 ADARB1P78563 741 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 PPP2R2BQ00005 443 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 HHEXQ03014 270 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 HSPB3Q12988 150 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 SIM2Q14190 667 aaPredicted RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 TTC23Q5W5X9 447 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 FCRL6Q6DN72 434 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 REEP3Q6NUK4 255 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 ARMC6Q6NXE6 501 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 KLHL35Q6PF15 583 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 CEACAM20Q6UY09 585 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 SLC36A4Q6YBV0 504 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 ABHD13Q7L211 337 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 ZC3H7AQ8IWR0 971 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 SDR16C5Q8N3Y7 309 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 FAM160A2Q8N612 972 aaPredicted RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 FAM46DQ8NEK8 389 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 PJA1Q8NG27 643 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 NFKBIDQ8NI38 313 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 BAHD1Q8TBE0 780 aaPredicted RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 RMND5BQ96G75 393 aaPredicted RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 TPD52L3Q96J77 140 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 SPACA7Q96KW9 195 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 SERINC2Q96SA4 455 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 YTHDF1Q9BYJ9 559 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 FOXQ1Q9C009 403 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 GABARAPL1Q9H0R8 117 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 SIRT3Q9NTG7 399 aaPredicted RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 HRASLS2Q9NWW9 162 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 NDUFA13Q9P0J0 144 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 C3orf18Q9UK00 162 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 ATG4BQ9Y4P1 393 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 TDRD6O60522 2096 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 A0A1W2PR77 199 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 C4orf51C9J302 202 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 PROM1O43490 865 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 SH3BP5O60239 455 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 SNAP29O95721 258 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 CLPTM1O96005 669 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 CSF2P04141 144 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 NME1P15531 152 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 ITGA2P17301 1181 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 CSNK2A2P19784 350 aaPredicted RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 FPR1P21462 350 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 CERS1P27544 350 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 GPC1P35052 558 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 BUD31P41223 144 aaPredicted RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 RAD23AP54725 363 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 PCBP3P57721 371 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 RAB8AP61006 207 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 BTN3A2P78410 334 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 KCNJ10P78508 379 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 GK3PQ14409 553 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 IFI44LQ53G44 452 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 ZNF542PQ5EBM4 170 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 ZC3H12BQ5HYM0 836 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 SLC48A1Q6P1K1 146 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 USP51Q70EK9 711 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 C6orf120Q7Z4R8 191 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 VTCN1Q7Z7D3 282 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 TRIM73Q86UV7 250 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 GKN2Q86XP6 184 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 SIX5Q8N196 739 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 FRMD1Q8N878 549 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 UTP15Q8TED0 518 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 PATE1Q8WXA2 126 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 CLDN23Q96B33 292 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 C7orf34Q96L11 122 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 ZNF347Q96SE7 839 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 MACROD1Q9BQ69 325 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 LRRC61Q9BV99 259 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 REEP1Q9H902 201 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 UCK1Q9HA47 277 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 CLK4Q9HAZ1 481 aaKnown RBP13.44□□□□□ -0.26
LIG3-205ENST00000585941 MS4A12Q9NXJ0 267 aa13.44□□□□□ -0.26
LIG3-205ENST00000585941 SPTBN5Q9NRC6 3674 aaKnown RBP13.43□□□□□ -0.26
LIG3-205ENST00000585941 OR5K3A6NET4 321 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 C5orf58C9J3I9 102 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 H3BNH8 94 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 TLR4O00206 839 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 GCM2O75603 506 aaPredicted RBP13.43□□□□□ -0.26
LIG3-205ENST00000585941 AIFM1O95831 613 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 ZNF888P0CJ79 500 aaPredicted RBP13.43□□□□□ -0.26
LIG3-205ENST00000585941 SMIM18P0DKX4 95 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 SMIM10L1P0DMW3 83 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 NR2F6P10588 404 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 AQP1P29972 269 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 MPIP34949 423 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 CDK9P50750 372 aaKnown RBP13.43□□□□□ -0.26
LIG3-205ENST00000585941 NCBP2P52298 156 aaKnown RBP eCLIP13.43□□□□□ -0.26
LIG3-205ENST00000585941 CRYBA2P53672 197 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 VLDLRP98155 873 aa13.43□□□□□ -0.26
LIG3-205ENST00000585941 CEBPEQ15744 281 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms