RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	ZNF223	Q9UK11	482 aa	Predicted RBP	12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760		A0A0A6YYD5	115 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	TRBV11-1	A0A0K0K1C0	115 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	PRSS44	E7EML9	344 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	GOLGA8R	I6L899	631 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	EED	O75530	441 aa	Known RBP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	SEMA3D	O95025	777 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	PTX3	P26022	381 aa	Predicted RBP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	TPP2	P29144	1249 aa	Predicted RBP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	BSG	P35613	385 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	CD96	P40200	585 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	ARL1	P40616	181 aa	Predicted RBP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	ST13	P50502	369 aa	Known RBP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	HERVK_113	P63132	956 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	TNFRSF17	Q02223	184 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	SLAMF1	Q13291	335 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	C10orf62	Q5T681	223 aa	Predicted RBP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	FRG2	Q64ET8	278 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	MRM1	Q6IN84	353 aa	Known RBP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	LETMD1	Q6P1Q0	360 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	BCORP1	Q8N888	145 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	OR4F6	Q8NGB9	312 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	UBLCP1	Q8WVY7	318 aa	Predicted RBP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	ATP6V1E2	Q96A05	226 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	ANKRD9	Q96BM1	317 aa	Predicted RBP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	VMP1	Q96GC9	406 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	TMEM237	Q96Q45	408 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	FRG2B	Q96QU4	278 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	ERVK-6	Q9BXR3	956 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	CDCP1	Q9H5V8	836 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	DDX31	Q9H8H2	851 aa	Known RBP	12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	PRM3	Q9NNZ6	103 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	MS4A12	Q9NXJ0	267 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	ANKRD10	Q9NXR5	420 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	VTI1B	Q9UEU0	232 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	TBK1	Q9UHD2	729 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	PHF11	Q9UIL8	331 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	PCDHGB6	Q9Y5F9	930 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	SPACA6	W5XKT8	324 aa		12.41	□□□□□ -0.42
SREBF1-223	ENST00000584760	CROCC	Q5TZA2	2017 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	PPP6C	O00743	305 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	CDK2AP1	O14519	115 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	TMPRSS11D	O60235	418 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	DLX3	O60479	287 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	LDB3	O75112	727 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	NEURL1	O76050	574 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	OTC	P00480	354 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	GSTA1	P08263	222 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	PYGB	P11216	843 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	EDN3	P14138	238 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	TSPAN8	P19075	237 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	CPN2	P22792	545 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	CLCN2	P51788	898 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	TDGF1P3	P51864	188 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	CDH13	P55290	713 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	MLF1	P58340	268 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	IGLV3-21	P80748	117 aa	Predicted RBP	12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	ID2	Q02363	134 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	SERTAD2	Q14140	314 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	OR1C1	Q15619	314 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	ZNF766	Q5HY98	468 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	ZNF468	Q5VIY5	522 aa	Predicted RBP	12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	FAM219B	Q5XKK7	198 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	SH2D5	Q6ZV89	423 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	NUDT13	Q86X67	352 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	TDRP	Q86YL5	185 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	SUN3	Q8TAQ9	357 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	NR4A3	Q92570	626 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	NCLN	Q969V3	563 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	SCMH1	Q96GD3	660 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	SERPINI1	Q99574	410 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	CCDC77	Q9BR77	488 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	UTP23	Q9BRU9	249 aa	Known RBP	12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	HES7	Q9BYE0	225 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	PPCS	Q9HAB8	311 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	OLAH	Q9NV23	265 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	ZNF225	Q9UK10	706 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	FBXW2	Q9UKT8	454 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	EMCN	Q9ULC0	261 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	ATG4B	Q9Y4P1	393 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	ASB4	Q9Y574	426 aa		12.4	□□□□□ -0.42
SREBF1-223	ENST00000584760	MYOCOS	A0A1B0GUC4	107 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760		A0A1W2PPM1	405 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	FOXO6	A8MYZ6	492 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	FGF17	O60258	216 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	PRKRA	O75569	313 aa	Known RBP	12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	RASAL1	O95294	804 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	TAC1	P20366	129 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	ATP5F1	P24539	256 aa	Predicted RBP	12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	TRHR	P34981	398 aa	Predicted RBP	12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	SLCO1A2	P46721	670 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	PMP22	Q01453	160 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	STX4	Q12846	297 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	RASA2	Q15283	850 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	UNC50	Q53HI1	259 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	ZNF678	Q5SXM1	525 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	C18orf63	Q68DL7	685 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	MILR1	Q7Z6M3	343 aa		12.39	□□□□□ -0.43
SREBF1-223	ENST00000584760	GPR180	Q86V85	440 aa		12.39	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms