RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 NUDT13Q86X67 352 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 CRLF3Q8IUI8 442 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 GSPT2Q8IYD1 628 aaKnown RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 SHISA5Q8N114 240 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 TMEM132CQ8N3T6 1108 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 ACOT4Q8N9L9 421 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 FAM98AQ8NCA5 519 aaKnown RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 B3GNT7Q8NFL0 401 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 HUS1BQ8NHY5 278 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 ACMSDQ8TDX5 336 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 UBLCP1Q8WVY7 318 aaPredicted RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS53-214ENST00000572607 DAZLQ92904 295 aaKnown RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 VMP1Q96GC9 406 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 C5orf34Q96MH7 638 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 CSF3RQ99062 836 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 MTERF1Q99551 399 aaKnown RBP7.58□□□□□ -1.2
VPS53-214ENST00000572607 OR51B5Q9H339 312 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 ELOVL6Q9H5J4 265 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 PPCSQ9HAB8 311 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 WDR41Q9HAD4 459 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 ADAP2Q9NPF8 381 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 DMRT3Q9NQL9 472 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 NECTIN3Q9NQS3 549 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 PRDM7Q9NQW5 492 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 OLAHQ9NV23 265 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 ZNF358Q9NW07 568 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 MS4A12Q9NXJ0 267 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 PHF11Q9UIL8 331 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 FBXW2Q9UKT8 454 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 TSC22D4Q9Y3Q8 395 aa7.58□□□□□ -1.2
VPS53-214ENST00000572607 MDC1Q14676 2089 aaKnown RBP7.57□□□□□ -1.2
VPS53-214ENST00000572607 TRBV11-1A0A0K0K1C0 115 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 ARHGAP10A1A4S6 786 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 LRRC14BA6NHZ5 514 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 GABRR3A8MPY1 467 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 RTCAO00442 366 aaKnown RBP7.57□□□□□ -1.2
VPS53-214ENST00000572607 E2F3O00716 465 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 SCELO95171 688 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 MLYCDO95822 493 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 TBX6O95947 436 aaPredicted RBP7.57□□□□□ -1.2
VPS53-214ENST00000572607 OTCP00480 354 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 FAM153BP0C7A2 387 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 KRT15P19012 456 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 BUD31P41223 144 aaPredicted RBP7.57□□□□□ -1.2
VPS53-214ENST00000572607 MAP2K3P46734 347 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 SLAMF1Q13291 335 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 BIKQ13323 160 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 MRPL49Q13405 166 aaKnown RBP7.57□□□□□ -1.2
VPS53-214ENST00000572607 CUL3Q13618 768 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 TUBA3CQ13748 450 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 OR1C1Q15619 314 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 ZRSR2Q15696 482 aaKnown RBP7.57□□□□□ -1.2
VPS53-214ENST00000572607 ELAVL1Q15717 326 aaKnown RBP7.57□□□□□ -1.2
VPS53-214ENST00000572607 FAM153CQ494X1 144 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 C4orf17Q53FE4 359 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 ZNF766Q5HY98 468 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 H3F3CQ6NXT2 135 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 TUBA3EQ6PEY2 450 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 CYP20A1Q6UW02 462 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 SLC22A9Q8IVM8 553 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 SCUBE1Q8IWY4 988 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 ZCCHC7Q8N3Z6 543 aaKnown RBP7.57□□□□□ -1.2
VPS53-214ENST00000572607 L3MBTL4Q8NA19 623 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 TMEM178AQ8NBL3 297 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 ST6GALNAC3Q8NDV1 305 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 OR14A16Q8NHC5 309 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 ELP5Q8TE02 316 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 GRHL3Q8TE85 626 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 FAR1Q8WVX9 515 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 TMEM125Q96AQ2 219 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 SERPINI1Q99574 410 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 CDCP1Q9H5V8 836 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 L2HGDHQ9H9P8 463 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 SEMA4BQ9NPR2 832 aaPredicted RBP7.57□□□□□ -1.2
VPS53-214ENST00000572607 NMRK1Q9NWW6 199 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 LYARQ9NX58 379 aaKnown RBP7.57□□□□□ -1.2
VPS53-214ENST00000572607 ANKRD10Q9NXR5 420 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 PSD3Q9NYI0 1048 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 AHSPQ9NZD4 102 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 COPS7AQ9UBW8 275 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 TBK1Q9UHD2 729 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 PCTPQ9UKL6 214 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 STK38LQ9Y2H1 464 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 RNF11Q9Y3C5 154 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 CLCA3PQ9Y6N3 262 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 NUP210LQ5VU65 1888 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 ABCA12Q86UK0 2595 aa7.57□□□□□ -1.2
VPS53-214ENST00000572607 FBN2P35556 2912 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 CCDC151A5D8V7 595 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 A8MT66 165 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 GOLGA8RI6L899 631 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 FOXE1O00358 373 aaPredicted RBP7.56□□□□□ -1.2
VPS53-214ENST00000572607 CYR61O00622 381 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 PLPP1O14494 284 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 OR7A17O14581 309 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 GLRA3O75311 464 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 ZFAND5O76080 213 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 SUPT7LO94864 414 aa7.56□□□□□ -1.2
VPS53-214ENST00000572607 SEMA3DO95025 777 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms