RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	MYLK4	Q86YV6	388 aa	Predicted RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	PLD6	Q8N2A8	252 aa	Known RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	L3MBTL4	Q8NA19	623 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	FAM98A	Q8NCA5	519 aa	Known RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	APCDD1L	Q8NCL9	501 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	MORN4	Q8NDC4	146 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	UHMK1	Q8TAS1	419 aa	Known RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	THAP3	Q8WTV1	239 aa	Predicted RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	PTPMT1	Q8WUK0	201 aa	Predicted RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	DCAKD	Q8WVC6	231 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	DAZL	Q92904	295 aa	Known RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	NCLN	Q969V3	563 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	RELT	Q969Z4	430 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	ATP6V1E2	Q96A05	226 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	TMEM125	Q96AQ2	219 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	PHF21B	Q96EK2	531 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	VMP1	Q96GC9	406 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	SCMH1	Q96GD3	660 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	CSF3R	Q99062	836 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	PAFAH2	Q99487	392 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	MTERF1	Q99551	399 aa	Known RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	MAPKAP1	Q9BPZ7	522 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	MRPL57	Q9BQC6	102 aa	Known RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	HES7	Q9BYE0	225 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	OR51B5	Q9H339	312 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	ZNF358	Q9NW07	568 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	MS4A12	Q9NXJ0	267 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	ZNF180	Q9UJW8	692 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	FBXW2	Q9UKT8	454 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	NFU1	Q9UMS0	254 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	YARS2	Q9Y2Z4	477 aa	Known RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	RNF11	Q9Y3C5	154 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	CLDN16	Q9Y5I7	305 aa		6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	NUP214	P35658	2090 aa	Predicted RBP	6.45	□□□□□ -1.38
SF3B3-209	ENST00000567635	ASPDH	A6ND91	283 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	TRIM49D1	C9J1S8	452 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	NPIPA5	E9PKD4	350 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	FOXE1	O00358	373 aa	Predicted RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	PLPP1	O14494	284 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	PROM1	O43490	865 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	NME2P1	O60361	137 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	LDB3	O75112	727 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	SMIM24	O75264	130 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	ITGA10	O75578	1167 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	WISP2	O76076	250 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	SCEL	O95171	688 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	SIX3	O95343	332 aa	Predicted RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	CLDN1	O95832	211 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	COX7A2	P14406	83 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	NME2	P22392	152 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	ARL1	P40616	181 aa	Predicted RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	MAGEA12	P43365	314 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	SSR4	P51571	173 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	NEK2	P51955	445 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	CCNG1	P51959	295 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	RPS13	P62277	151 aa	Known RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	PMP22	Q01453	160 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	SRSF11	Q05519	484 aa	Known RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	RBPJ	Q06330	500 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	CUL3	Q13618	768 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	ZRSR2	Q15696	482 aa	Known RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	ERCC6L	Q2NKX8	1250 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	C1QL3	Q5VWW1	255 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	HIST2H2BC	Q6DN03	193 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	HSDL2	Q6YN16	418 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	GALNTL5	Q7Z4T8	443 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	FJX1	Q86VR8	437 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	ZNF227	Q86WZ6	799 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	RNF175	Q8N4F7	328 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	TMEM156	Q8N614	296 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	PTGR2	Q8N8N7	351 aa	Predicted RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	LRRN4CL	Q8ND94	238 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	OR14A16	Q8NHC5	309 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	TANK	Q92844	425 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	ISL2	Q96A47	359 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	ANKRD9	Q96BM1	317 aa	Predicted RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	MTFMT	Q96DP5	389 aa	Known RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	RBM18	Q96H35	190 aa	Known RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	NTMT1	Q9BV86	223 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	SORBS1	Q9BX66	1292 aa	Known RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	RPF2	Q9H7B2	306 aa	Known RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	NOL11	Q9H8H0	719 aa	Known RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	DDX31	Q9H8H2	851 aa	Known RBP	6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	DMRT3	Q9NQL9	472 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	NPIPA1	Q9UND3	350 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	NCKAP5	O14513	1909 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	ARHGAP21	Q5T5U3	1957 aa		6.44	□□□□□ -1.38
SF3B3-209	ENST00000567635	MPDZ	O75970	2070 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	CRYBG3	Q68DQ2	2970 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	TRGV8	A0A0C4DH27	118 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	EXOC1L	A0A1B0GW35	172 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	TMEM200C	A6NKL6	621 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	C17orf105	B2RV13	164 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	KLRC4-KLRK1	H3BQV0	150 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	STX16-NPEPL1	H3BU86	382 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	CCL21	O00585	134 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	OR7A17	O14581	309 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	STX16	O14662	325 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	ASNA1	O43681	348 aa		6.43	□□□□□ -1.38
SF3B3-209	ENST00000567635	PEX1	O43933	1283 aa		6.43	□□□□□ -1.38

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms