RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 HOXC5Q00444 222 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 SPIBQ01892 262 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 ACY1Q03154 408 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 ABHD18Q0P651 414 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 CHAF1BQ13112 559 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 TRMT5Q32P41 509 aaKnown RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 MTX3Q5HYI7 312 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 PAGE3Q5JUK9 113 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 PMS2CLQ68D20 193 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 TMEM214Q6NUQ4 689 aaKnown RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 FAM111BQ6SJ93 734 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 LCTLQ6UWM7 567 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 RABEPKQ7Z6M1 372 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 KIAA0907Q7Z7F0 614 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 IQCHQ86VS3 1027 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 CADM4Q8NFZ8 388 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 PHOSPHO1Q8TCT1 267 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 LRRC58Q96CX6 371 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 CNBD2Q96M20 576 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 CADM1Q9BY67 442 aaKnown RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 DEFB126Q9BYW3 111 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 DUSP15Q9H1R2 295 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 TUBB1Q9H4B7 451 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 APMAPQ9HDC9 416 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 KLHL1Q9NR64 748 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 KLRF1Q9NZS2 232 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 C3orf18Q9UK00 162 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 USP22Q9UPT9 525 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 ATG4BQ9Y4P1 393 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 DNMT3AQ9Y6K1 912 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 C2orf72A6NCS6 295 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 PGRMC2O15173 223 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 SUV39H1O43463 412 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 CDC40O60508 579 aaKnown RBP eCLIP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 PAPLNO95428 1278 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 SERPINA1P01009 418 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 ATP6V1B1P15313 513 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 CDH2P19022 906 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 HIST1H1TP22492 207 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 JAK1P23458 1154 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 NUDT1P36639 197 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 NR0B1P51843 470 aaKnown RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 FOLH1Q04609 750 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 CRTC2Q53ET0 693 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 GCNT6Q5T4J0 391 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 METTL21CQ5VZV1 264 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 CES4AQ5XG92 561 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 CCDC81Q6ZN84 652 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 LINC00696Q6ZRV3 163 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 GALNT12Q8IXK2 581 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 UBQLNLQ8IYU4 475 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 C11orf65Q8NCR3 313 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 ZNF483Q8TF39 744 aaPredicted RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 L3HYPDHQ96EM0 354 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 TEX37Q96LM6 180 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 TBL1XR1Q9BZK7 514 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 SLC6A16Q9GZN6 736 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 TMEM185BQ9H7F4 350 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 RXFP3Q9NSD7 469 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 MRGBPQ9NV56 204 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 USP36Q9P275 1121 aaKnown RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 WARS2Q9UGM6 360 aaKnown RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 PPIL1Q9Y3C6 166 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 SAMHD1Q9Y3Z3 626 aaKnown RBP5.17□□□□□ -1.58
VPS13C-209ENST00000560637 ENTPD2Q9Y5L3 495 aa5.17□□□□□ -1.58
VPS13C-209ENST00000560637 GFYI3L273 518 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 AP3D1O14617 1153 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 KLF11O14901 512 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 CTSVO60911 334 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 SNNO75324 88 aaPredicted RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 CST1P01037 141 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 GLB1P16278 677 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PKLRP30613 574 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 RPS26P11Q5JNZ5 115 aaPredicted RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 ABI3BPQ7Z7G0 1075 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 NRROSQ86YC3 692 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 DEPDC4Q8N2C3 294 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 AMER3Q8N944 861 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 OR2L5Q8NG80 312 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 OR51Q1Q8NH59 317 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PHF10Q8WUB8 498 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 RIT1Q92963 219 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 SLC25A36Q96CQ1 311 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 CCDC74BQ96LY2 380 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 LPAR4Q99677 370 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 CIB1Q99828 191 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 QRSL1Q9H0R6 528 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 ZNF304Q9HCX3 659 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TRPV5Q9NQA5 729 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 IMPAD1Q9NX62 359 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PHF11Q9UIL8 331 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 ANAPC2Q9UJX6 822 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 ZNF451Q9Y4E5 1061 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 FAM208BQ5VWN6 2430 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 PDCD11Q14690 1871 aaKnown RBP5.16□□□□□ -1.58
VPS13C-209ENST00000560637 DHRS12A0PJE2 317 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TSPAN11A1L157 253 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 TLCD2A6NGC4 264 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 GABRR3A8MPY1 467 aa5.16□□□□□ -1.58
VPS13C-209ENST00000560637 C17orf105B2RV13 164 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms