RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CLDN4O14493 209 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 TM9SF1O15321 606 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 TRIM13O60858 407 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 CTNSO60931 367 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 ITGAMP11215 1152 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 ICAM2P13598 275 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 HSD3B1P14060 373 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 CPN2P22792 545 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 HSD3B2P26439 372 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 PPP2R1BP30154 601 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 HMOX2P30519 316 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 ALDH3A1P30838 453 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 ETV4P43268 484 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 FOXA1P55317 472 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 HNRNPH2P55795 449 aaKnown RBP8.77□□□□□ -1.01
LDLR-211ENST00000560173 AP2B1P63010 937 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 TNFRSF17Q02223 184 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 TBL3Q12788 808 aaKnown RBP8.77□□□□□ -1.01
LDLR-211ENST00000560173 KLRB1Q12918 225 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 CSTF3Q12996 717 aaKnown RBP8.77□□□□□ -1.01
LDLR-211ENST00000560173 SLC13A2Q13183 592 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 EXT1Q16394 746 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 AGAP7PQ5VUJ5 663 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 JMJD6Q6NYC1 403 aaPredicted RBP8.77□□□□□ -1.01
LDLR-211ENST00000560173 IGFL2Q6UWQ7 119 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 IGFL3Q6UXB1 125 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 COMMD6Q7Z4G1 85 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 GPR180Q86V85 440 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 METTL4Q8N3J2 472 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 EFCAB3Q8N7B9 438 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 BRIX1Q8TDN6 353 aaKnown RBP8.77□□□□□ -1.01
LDLR-211ENST00000560173 ZBTB9Q96C00 473 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 AGAP4Q96P64 663 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 KCNA7Q96RP8 456 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 LPAR4Q99677 370 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 TRMOQ9BU70 441 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 MECRQ9BV79 373 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 GATA5Q9BWX5 397 aaPredicted RBP8.77□□□□□ -1.01
LDLR-211ENST00000560173 ZBTB20Q9HC78 741 aaPredicted RBP8.77□□□□□ -1.01
LDLR-211ENST00000560173 TNFRSF12AQ9NP84 129 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 KCNK9Q9NPC2 374 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 PHF11Q9UIL8 331 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 ANAPC2Q9UJX6 822 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 ADAM29Q9UKF5 820 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 FBXW2Q9UKT8 454 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 SLC12A4Q9UP95 1085 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 ATG4BQ9Y4P1 393 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 ASB4Q9Y574 426 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 TIMM22Q9Y584 194 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 SPACA6W5XKT8 324 aa8.77□□□□□ -1.01
LDLR-211ENST00000560173 TMEM120BA0PK00 339 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 SERTM1A2A2V5 107 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 SYNDIG1LA6NDD5 238 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 SAGE2PA6NJ88 616 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 NDUFAB1O14561 156 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 SUV39H1O43463 412 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 PROM1O43490 865 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 DPM1O60762 260 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 ULK1O75385 1050 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 AIFM1O95831 613 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 FAM107AO95990 144 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 GBAP04062 536 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 FAM58BPP0C7Q3 252 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 NR2F6P10588 404 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 CHN1P15882 459 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 TPP2P29144 1249 aaPredicted RBP8.76□□□□□ -1.01
LDLR-211ENST00000560173 CD97P48960 835 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 SLC26A5P58743 744 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 GUCY1A3Q02108 690 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 ZNF33BQ06732 778 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 ACTN3Q08043 901 aaPredicted RBP8.76□□□□□ -1.01
LDLR-211ENST00000560173 GALNT1Q10472 559 aaPredicted RBP8.76□□□□□ -1.01
LDLR-211ENST00000560173 ASPHQ12797 758 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 MFAP5Q13361 173 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 BTBD16Q32M84 506 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 CRB2Q5IJ48 1285 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 COLEC12Q5KU26 742 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 C18orf63Q68DL7 685 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 CYP20A1Q6UW02 462 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 ISLR2Q6UXK2 745 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 PAGE2Q7Z2X7 111 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 CLNKQ7Z7G1 428 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 SIRT6Q8N6T7 355 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 RBMXL3Q8N7X1 1067 aaKnown RBP8.76□□□□□ -1.01
LDLR-211ENST00000560173 GBP7Q8N8V2 638 aaPredicted RBP8.76□□□□□ -1.01
LDLR-211ENST00000560173 TEX19Q8NA77 164 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 NFAM1Q8NET5 270 aaPredicted RBP8.76□□□□□ -1.01
LDLR-211ENST00000560173 M1APQ8TC57 530 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 BCAS4Q8TDM0 211 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 TM9SF4Q92544 642 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 ANKRD9Q96BM1 317 aaPredicted RBP8.76□□□□□ -1.01
LDLR-211ENST00000560173 ACPTQ9BZG2 426 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 FAM107BQ9H098 131 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 RPF2Q9H7B2 306 aaKnown RBP8.76□□□□□ -1.01
LDLR-211ENST00000560173 MMP25Q9NPA2 562 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 ADAP2Q9NPF8 381 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 NMRK1Q9NWW6 199 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 MS4A12Q9NXJ0 267 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 AHSPQ9NZD4 102 aa8.76□□□□□ -1.01
LDLR-211ENST00000560173 VPS29Q9UBQ0 182 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms