RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 ITGA3P26006 1051 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 TLX1P31314 330 aaPredicted RBP13.45□□□□□ -0.26
USP3-205ENST00000557884 BUD31P41223 144 aaPredicted RBP13.45□□□□□ -0.26
USP3-205ENST00000557884 HSD17B7P56937 341 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 RAE1P78406 368 aaKnown RBP13.45□□□□□ -0.26
USP3-205ENST00000557884 ZNF33BQ06732 778 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 Q0VFX4 171 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 AIMP2Q13155 320 aaKnown RBP13.45□□□□□ -0.26
USP3-205ENST00000557884 UGT3A2Q3SY77 523 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 PAPD4Q6PIY7 484 aaKnown RBP13.45□□□□□ -0.26
USP3-205ENST00000557884 TRIM46Q7Z4K8 759 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 MMP21Q8N119 569 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 GALNT16Q8N428 558 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 ZNF781Q8N8C0 355 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 WDR77Q9BQA1 342 aaPredicted RBP13.45□□□□□ -0.26
USP3-205ENST00000557884 RPF2Q9H7B2 306 aaKnown RBP13.45□□□□□ -0.26
USP3-205ENST00000557884 PNO1Q9NRX1 252 aaKnown RBP13.45□□□□□ -0.26
USP3-205ENST00000557884 RIC8BQ9NVN3 520 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 MS4A12Q9NXJ0 267 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 CLDN16Q9Y5I7 305 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 DNAJC15Q9Y5T4 150 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 BSNQ9UPA5 3926 aa13.45□□□□□ -0.26
USP3-205ENST00000557884 GNG14A0A1W2PPG7 69 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 A0A1W2PQ72 361 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 TCRBV16S1A1N1A0A5B0 115 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 MKRN2OSH3BPM6 223 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 SLC28A1O00337 649 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 FGF17O60258 216 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 SKAP2O75563 359 aaPredicted RBP13.44□□□□□ -0.26
USP3-205ENST00000557884 NR1D1P20393 614 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 TIA1P31483 386 aaKnown RBP eCLIP13.44□□□□□ -0.26
USP3-205ENST00000557884 STX4Q12846 297 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 NR6A1Q15406 480 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 SPIN4Q56A73 249 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 FDCSPQ8NFU4 85 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 OR2T11Q8NH01 316 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 CDC26Q8NHZ8 85 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 ABHD17AQ96GS6 310 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 THOC3Q96J01 351 aaKnown RBP13.44□□□□□ -0.26
USP3-205ENST00000557884 BBC3Q96PG8 261 aaPredicted RBP13.44□□□□□ -0.26
USP3-205ENST00000557884 TUBB6Q9BUF5 446 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 SLC25A23Q9BV35 468 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 ZNF71Q9NQZ8 489 aaPredicted RBP13.44□□□□□ -0.26
USP3-205ENST00000557884 GPR83Q9NYM4 423 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 CCL27Q9Y4X3 112 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 ATRXP46100 2492 aa13.44□□□□□ -0.26
USP3-205ENST00000557884 K7EM74 188 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 PGRMC2O15173 223 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 ATXN7O15265 892 aaPredicted RBP13.43□□□□□ -0.26
USP3-205ENST00000557884 RGS14O43566 566 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 RSL1D1O76021 490 aaKnown RBP13.43□□□□□ -0.26
USP3-205ENST00000557884 IFNA16P05015 189 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 FOLH1Q04609 750 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 PDCD2Q16342 344 aaPredicted RBP13.43□□□□□ -0.26
USP3-205ENST00000557884 BTBD16Q32M84 506 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 GALNTL6Q49A17 601 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 NDUFAF5Q5TEU4 345 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 Q6ZSR9 355 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 KBTBD2Q8IY47 623 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 C9orf43Q8TAL5 461 aaPredicted RBP13.43□□□□□ -0.26
USP3-205ENST00000557884 TANKQ92844 425 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 ANKRD9Q96BM1 317 aaPredicted RBP13.43□□□□□ -0.26
USP3-205ENST00000557884 TM4SF18Q96CE8 201 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 PPP1R36Q96LQ0 422 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 IMMP1LQ96LU5 166 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 SORT1Q99523 831 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 LPAR4Q99677 370 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 NUDT9Q9BW91 350 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 ALOXE3Q9BYJ1 711 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 SEMA4CQ9C0C4 833 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 ILKAPQ9H0C8 392 aaPredicted RBP13.43□□□□□ -0.26
USP3-205ENST00000557884 WDR41Q9HAD4 459 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 LRTM1Q9HBL6 345 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 PNPOQ9NVS9 261 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 C5AR2Q9P296 337 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 GIMAP2Q9UG22 337 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 MCM8Q9UJA3 840 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 RAP2CQ9Y3L5 183 aa13.43□□□□□ -0.26
USP3-205ENST00000557884 POLR3HQ9Y535 204 aaPredicted RBP13.43□□□□□ -0.26
USP3-205ENST00000557884 BLACEA4D250 179 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 SEC22BO75396 215 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 CEACAM4O75871 244 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 MYO1DO94832 1006 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 JUNP05412 331 aaKnown RBP13.42□□□□□ -0.26
USP3-205ENST00000557884 SERPINA7P05543 415 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 IL3P08700 152 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 ANXA4P09525 319 aaPredicted RBP13.42□□□□□ -0.26
USP3-205ENST00000557884 PRR35P0CG20 571 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 ITGAMP11215 1152 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 ALDH9A1P49189 494 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 TAS2R50P59544 299 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 PPP2R2AP63151 447 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 RPL38P63173 70 aaKnown RBP13.42□□□□□ -0.26
USP3-205ENST00000557884 MYBPC3Q14896 1274 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 IRAK1BP1Q5VVH5 260 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 ATG16L1Q676U5 607 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 OR52E8Q6IFG1 317 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 TRIM42Q8IWZ5 723 aa13.42□□□□□ -0.26
USP3-205ENST00000557884 BRIX1Q8TDN6 353 aaKnown RBP13.42□□□□□ -0.26
USP3-205ENST00000557884 DOK4Q8TEW6 326 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms