RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 SERINC2Q96SA4 455 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 SH3GL2Q99962 352 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 SLX1AQ9BQ83 275 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 MECRQ9BV79 373 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 GATA5Q9BWX5 397 aaPredicted RBP9.53□□□□□ -0.88
VPS28-204ENST00000526054 TGIF2Q9GZN2 237 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 AICDAQ9GZX7 198 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 OR51B5Q9H339 312 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 EML4Q9HC35 981 aaKnown RBP9.53□□□□□ -0.88
VPS28-204ENST00000526054 NMRK1Q9NWW6 199 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 NKIRAS1Q9NYS0 192 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 PTGFRNQ9P2B2 879 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 ZNF225Q9UK10 706 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 ZGRF1Q86YA3 2104 aa9.53□□□□□ -0.88
VPS28-204ENST00000526054 TEP1Q99973 2627 aaKnown RBP9.52□□□□□ -0.88
VPS28-204ENST00000526054 CSMD1Q96PZ7 3565 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 LRBAP50851 2863 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 TMEM120BA0PK00 339 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 IDSB3KWA1 339 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 MANBAO00462 879 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 PCDH17O14917 1159 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 BIRC5O15392 142 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 CHST10O43529 356 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 ULK1O75385 1050 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 SCELO95171 688 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 BMP10O95393 424 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 B3GALT4O96024 378 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 PDYNP01213 254 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 HEXBP07686 556 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 PRR35P0CG20 571 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 NEFHP12036 1026 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 RNH1P13489 461 aaKnown RBP9.52□□□□□ -0.89
VPS28-204ENST00000526054 CERS1P27544 350 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 NEK2P51955 445 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 SLC18A1P54219 525 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 EMP2P54851 167 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 OLR1P78380 273 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 ZNF33BQ06732 778 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 CSTF3Q12996 717 aaKnown RBP9.52□□□□□ -0.89
VPS28-204ENST00000526054 INAQ16352 499 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 MINDY4Q4G0A6 757 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 SGO1Q5FBB7 561 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 HHATQ5VTY9 493 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 RPUSD3Q6P087 351 aaKnown RBP9.52□□□□□ -0.89
VPS28-204ENST00000526054 NDUFAF7Q7L592 441 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 NUDT13Q86X67 352 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 TICAM1Q8IUC6 712 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 CA13Q8N1Q1 262 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 RNF175Q8N4F7 328 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 SIRT6Q8N6T7 355 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 ANKRD42Q8N9B4 389 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 CATSPER1Q8NEC5 780 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 OR1N1Q8NGS0 311 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 BRIX1Q8TDN6 353 aaKnown RBP9.52□□□□□ -0.89
VPS28-204ENST00000526054 TBC1D20Q96BZ9 403 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 MTFMTQ96DP5 389 aaKnown RBP9.52□□□□□ -0.89
VPS28-204ENST00000526054 PEX11GQ96HA9 241 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 ATP6V1G3Q96LB4 118 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 LMF1Q96S06 567 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 BRF2Q9HAW0 419 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 RIC8BQ9NVN3 520 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 AHSPQ9NZD4 102 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 SLC12A4Q9UP95 1085 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 MRPS33Q9Y291 106 aaKnown RBP9.52□□□□□ -0.89
VPS28-204ENST00000526054 SPACA6W5XKT8 324 aa9.52□□□□□ -0.89
VPS28-204ENST00000526054 IGHV1-45A0A0A0MS14 117 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 TRAV17A0A0B4J275 112 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 A0A1B0GUH1 482 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 WDR91A4D1P6 747 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 HMGB1P1B2RPK0 211 aaPredicted RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 SAP18O00422 153 aaKnown RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 RTCAO00442 366 aaKnown RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 PLPP1O14494 284 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 UBFD1O14562 309 aaKnown RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 ZG16O60844 167 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 JRKO75564 520 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 CHEK2O96017 543 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 SERPINA7P05543 415 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 FHP07954 510 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 DHRS4L1P0CG22 281 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 UROSP10746 265 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 HIST1H1TP22492 207 aaPredicted RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 ATP5A1P25705 553 aaKnown RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 SOX11P35716 441 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 TNFSF10P50591 281 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 RAB38P57729 211 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 GALNT1Q10472 559 aaPredicted RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 TCHHL1Q5QJ38 904 aaPredicted RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 C1QL3Q5VWW1 255 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 FAAH2Q6GMR7 532 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 OR4C11Q6IEV9 310 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 ZCCHC23Q6ZST2 131 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 PAGE2Q7Z2X7 111 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 UBE3DQ7Z6J8 389 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 LAPTM4BQ86VI4 370 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 FJX1Q86VR8 437 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 SLC34A3Q8N130 599 aa9.51□□□□□ -0.89
VPS28-204ENST00000526054 ZCCHC7Q8N3Z6 543 aaKnown RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 GBP7Q8N8V2 638 aaPredicted RBP9.51□□□□□ -0.89
VPS28-204ENST00000526054 ACOT4Q8N9L9 421 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms