RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 KLHL21Q9UJP4 597 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 UBIAD1Q9Y5Z9 338 aa10.82□□□□□ -0.68
LIMCH1-217ENST00000512946 YDJCA8MPS7 323 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 CXCL11O14625 94 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 FADS1O60427 444 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 NFYAP23511 347 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF41P51814 821 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 PPP1R26Q5T8A7 1209 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 C22orf42Q6IC83 251 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 OR4F3Q6IEY1 312 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 FBXO16Q8IX29 292 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 CYP2W1Q8TAV3 490 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 PGLYRP2Q96PD5 576 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 SPATC1LQ9H0A9 340 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 DNTTIP1Q9H147 329 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 A0A0G2JN53 185 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 GGT3PA6NGU5 568 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 RNF212BA8MTL3 300 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 ONECUT3O60422 494 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 TMEM63AO94886 807 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 AK1P00568 194 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 BCHEP06276 602 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF286BP0CG31 522 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 ALPPL2P10696 532 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 GGT2P36268 569 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 PTPRRQ15256 657 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 TMEM151AQ8N4L1 468 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 B3GNT7Q8NFL0 401 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 DDX1Q92499 740 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 NT5C3BQ969T7 300 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 KIAA1191Q96A73 305 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 CMKLR1Q99788 373 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 DLGAP4Q9Y2H0 992 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC6A5Q9Y345 797 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 COL1A2P08123 1366 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 LOC285095A0A1B0GVY8 99 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 H3BMQ9 156 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 MANBAO00462 879 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 SCDO00767 359 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 GOSR2O14653 212 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 RHOP08100 348 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 UQCRC2P22695 453 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 IL4RP24394 825 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 OPRL1P41146 370 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 LSSP48449 732 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 NIPAL4Q0D2K0 466 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC2A7Q6PXP3 512 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 RBMS3Q6XE24 437 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 CAMKVQ8NCB2 501 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 OR6T1Q8NGN1 323 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 ACER1Q8TDN7 264 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 GATA6Q92908 595 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 COG8Q96MW5 612 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 ACTL8Q9H568 366 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 FAM212BQ9NTI7 297 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 TMEM94Q12767 1356 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 A0A1W2PQL4 384 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 HYKKA2RU49 373 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 CCDC85CA6NKD9 419 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 C2CD4BA6NLJ0 364 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 UBE2Q2LH0YL09 131 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 RPS17P08708 135 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 FAM163BP0C2L3 166 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 AKAIN1P0CW23 69 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 CDK4P11802 303 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 CA5AP35218 305 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 THBS2P35442 1172 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 FAM162BQ5T6X4 162 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 CEP68Q76N32 757 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 KANSL1Q7Z3B3 1105 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 VSIG10LQ86VR7 867 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 IQCF1Q8N6M8 205 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 OR51G2Q8NGK0 314 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 NFKBIDQ8NI38 313 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 LCN9Q8WX39 176 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 GTF2H4Q92759 462 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 KCTD12Q96CX2 325 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 FAM163AQ96GL9 167 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 KLHL13Q9P2N7 655 aa10.81□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF487B1APH4 448 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 IMPA2O14732 288 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 CASC3O15234 703 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 TOX4O94842 621 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 SNRNP70P08621 437 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ZBTB48P10074 688 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 RPL23AP62750 156 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 RANP62826 216 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 NKX3-2P78367 333 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 BTG3Q14201 252 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ELOAQ14241 798 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 RAB30Q15771 203 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 ZNF585AQ6P3V2 769 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 SLC7A5P1Q8MH63 180 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 OR6V1Q8N148 313 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 FANK1Q8TC84 345 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 PROKR1Q8TCW9 393 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 DENND1AQ8TEH3 1009 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 RADILQ96JH8 1075 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 CENPOQ9BU64 300 aa10.8□□□□□ -0.68
LIMCH1-217ENST00000512946 QTRT2Q9H974 415 aaKnown RBP10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms