RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 AGPAT1Q99943 283 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 C11orf70Q9BRQ4 267 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 GPATCH1Q9BRR8 931 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 ZNF670Q9BS34 389 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 CCM2Q9BSQ5 444 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 SARGQ9BW04 601 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 TDRD1Q9BXT4 1180 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 SLC39A8Q9C0K1 460 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 NAT10Q9H0A0 1025 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 GANQ9H2C0 597 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 SUDS3Q9H7L9 328 aaPredicted RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 MRM3Q9HC36 420 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 MOV10Q9HCE1 1003 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 SLC40A1Q9NP59 571 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 ACP6Q9NPH0 428 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 SEMA4BQ9NPR2 832 aaPredicted RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 TINAGQ9UJW2 476 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 NXT1Q9UKK6 140 aaKnown RBP3.72□□□□□ -1.81
USP54-217ENST00000498213 ACSL5Q9ULC5 683 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 COLEC10Q9Y6Z7 277 aa3.72□□□□□ -1.81
USP54-217ENST00000498213 FER1L5A0AVI2 2057 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 NPIPB15A6NHN6 443 aaPredicted RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 ANKRD66B4E2M5 251 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 C9J4A7 227 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 J3KR12 359 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 PRPF4O43172 522 aaKnown RBP eCLIP3.71□□□□□ -1.82
USP54-217ENST00000498213 SPAG6O75602 509 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 CTAG2O75638 210 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 MLYCDO95822 493 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 SOD1P00441 154 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 ENO1P06733 434 aaKnown RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 AMD1P17707 334 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 LHCGRP22888 699 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 PSMA2P25787 234 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 IDUAP35475 653 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 CD151P48509 253 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 AGTR2P50052 363 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 STX17P56962 302 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 LINC00205P59089 165 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 POLR2FP61218 127 aaKnown RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 SLC10A7Q0GE19 358 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 GALNT2Q10471 571 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 RPA4Q13156 261 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 GAB1Q13480 694 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 ITGA9Q13797 1035 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 KEAP1Q14145 624 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 PAFAH1B3Q15102 231 aaKnown RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 CDO1Q16878 200 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 CCDC122Q5T0U0 273 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 LIPMQ5VYY2 423 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 LRRC66Q68CR7 880 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 ACSM6Q6P461 480 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 ZNF549Q6P9A3 640 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 ZNF449Q6P9G9 518 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 GJB7Q6PEY0 223 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 LRIG3Q6UXM1 1119 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 KIAA0408Q6ZU52 694 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 HSD11B1LQ7Z5J1 315 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 LRRTM4Q86VH4 590 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 OOSP2Q86WS3 158 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 EID3Q8N140 333 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 EMC1Q8N766 993 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 RNF152Q8N8N0 203 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 SIDT2Q8NBJ9 832 aaKnown RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 CLEC1AQ8NC01 280 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 JOSD2Q8TAC2 188 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 PPP4R1Q8TF05 950 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 CA5BP1Q8WTZ4 195 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 GLMPQ8WWB7 406 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 NCSTNQ92542 709 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 GLYATL1Q969I3 302 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.71□□□□□ -1.82
USP54-217ENST00000498213 SDCCAG3Q96C92 435 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 ZNF845Q96IR2 970 aaPredicted RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 LINC00615Q96LM1 132 aaPredicted RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 MCEEQ96PE7 176 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 FERMT1Q9BQL6 677 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 ABHD14AQ9BUJ0 271 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 MLPHQ9BV36 600 aaPredicted RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 ISCUQ9H1K1 167 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 ABCG8Q9H221 673 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 CDCP1Q9H5V8 836 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 DHX35Q9H5Z1 703 aaKnown RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 VPS37BQ9H9H4 285 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 NOD2Q9HC29 1040 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 AIPL1Q9NZN9 384 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 TBC1D29Q9UFV1 150 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 LIMA1Q9UHB6 759 aaKnown RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 MOSPD1Q9UJG1 213 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 FARSAQ9Y285 508 aaKnown RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 UBE2J1Q9Y385 318 aaPredicted RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 CACNA1CQ13936 2221 aa3.71□□□□□ -1.82
USP54-217ENST00000498213 PRKDCP78527 4128 aaKnown RBP3.71□□□□□ -1.82
USP54-217ENST00000498213 C1orf232A0A0U1RR37 186 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 SYCE3A1L190 88 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 FAM234BA2RU67 622 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 NKX2-6A6NCS4 301 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 OR5K3A6NET4 321 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 FAM90A8PA6NJQ4 464 aa3.7□□□□□ -1.82
USP54-217ENST00000498213 FOXO6A8MYZ6 492 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms