RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 NEURL1O76050 574 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 SUPT7LO94864 414 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 PDYNP01213 254 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 IFNA16P05015 189 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 TAC1P20366 129 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 PRKAA2P54646 552 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 MLF1P58340 268 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 STX4Q12846 297 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 OR1C1Q15619 314 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 GGTA1PQ4G0N0 100 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 ZNF324BQ6AW86 544 aaPredicted RBP16.9■□□□□ 0.3
COL9A3-214ENST00000490398 GPR180Q86V85 440 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 FAR1Q8WVX9 515 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 PPWD1Q96BP3 646 aaKnown RBP16.9■□□□□ 0.3
COL9A3-214ENST00000490398 MRPL1Q9BYD6 325 aaKnown RBP16.9■□□□□ 0.3
COL9A3-214ENST00000490398 DDX31Q9H8H2 851 aaKnown RBP16.9■□□□□ 0.3
COL9A3-214ENST00000490398 ADAP2Q9NPF8 381 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 KLHL1Q9NR64 748 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 PSD3Q9NYI0 1048 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 VTI1BQ9UEU0 232 aa16.9■□□□□ 0.3
COL9A3-214ENST00000490398 HRKO00198 91 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 PROM1O43490 865 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 SLU7O95391 586 aaKnown RBP16.89■□□□□ 0.29
COL9A3-214ENST00000490398 DDAH2O95865 285 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 PROCP04070 461 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 GSTA1P08263 222 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 CHN1P15882 459 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 IMPDH1P20839 514 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 TAS2R50P59544 299 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 TNFRSF17Q02223 184 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 TERF2Q15554 542 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 ELAVL1Q15717 326 aaKnown RBP16.89■□□□□ 0.29
COL9A3-214ENST00000490398 ZNF766Q5HY98 468 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 TTC19Q6DKK2 380 aaPredicted RBP16.89■□□□□ 0.29
COL9A3-214ENST00000490398 LCA5Q86VQ0 697 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 C4orf33Q8N1A6 199 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 CDYL2Q8N8U2 506 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 PRR7Q8TB68 274 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 AENQ8WTP8 325 aaKnown RBP16.89■□□□□ 0.29
COL9A3-214ENST00000490398 UTP23Q9BRU9 249 aaKnown RBP16.89■□□□□ 0.29
COL9A3-214ENST00000490398 DEFB126Q9BYW3 111 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 SLC29A3Q9BZD2 475 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 GSTO2Q9H4Y5 243 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 RPF2Q9H7B2 306 aaKnown RBP16.89■□□□□ 0.29
COL9A3-214ENST00000490398 TEX10Q9NXF1 929 aaPredicted RBP16.89■□□□□ 0.29
COL9A3-214ENST00000490398 PPT2Q9UMR5 302 aa16.89■□□□□ 0.29
COL9A3-214ENST00000490398 PTPN13Q12923 2485 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 ANKUB1A6NFN9 424 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 AIFM1O95831 613 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 OTCP00480 354 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 FAM58BPP0C7Q3 252 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 KRT15P19012 456 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 MST1P26927 711 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 HTR6P50406 440 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 CLCN2P51788 898 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 PHEXP78562 749 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 IGLV3-21P80748 117 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-214ENST00000490398 OC90Q02509 493 aaPredicted RBP16.88■□□□□ 0.29
COL9A3-214ENST00000490398 FOLH1Q04609 750 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 IFT88Q13099 833 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 RCN2Q14257 317 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 NUDT13Q86X67 352 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 ARMC10Q8N2F6 343 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 FAM26EQ8N5C1 309 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 VMP1Q96GC9 406 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 SCMH1Q96GD3 660 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 KCNA7Q96RP8 456 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 SERPINI1Q99574 410 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 SLX1AQ9BQ83 275 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 CENPKQ9BS16 269 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 ELOVL6Q9H5J4 265 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 AGPAT4Q9NRZ5 378 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 TRPS1Q9UHF7 1281 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 DCDC2Q9UHG0 476 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 SPACA6W5XKT8 324 aa16.88■□□□□ 0.29
COL9A3-214ENST00000490398 TLDC2A0PJX2 215 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 C17orf105B2RV13 164 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 MANBAO00462 879 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 UBFD1O14562 309 aaKnown RBP16.87■□□□□ 0.29
COL9A3-214ENST00000490398 PGRMC2O15173 223 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 PLIN3O60664 434 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 ZNF354AO60765 605 aaPredicted RBP16.87■□□□□ 0.29
COL9A3-214ENST00000490398 GLRA3O75311 464 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 KLK1P06870 262 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 TDGF1P3P51864 188 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 ARFIP1P53367 373 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 GALNT1Q10472 559 aaPredicted RBP16.87■□□□□ 0.29
COL9A3-214ENST00000490398 TBL3Q12788 808 aaKnown RBP16.87■□□□□ 0.29
COL9A3-214ENST00000490398 FAM180AQ6UWF9 173 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 ZYG11AQ6WRX3 759 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 MMP21Q8N119 569 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 LGI4Q8N135 537 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 TMEM132CQ8N3T6 1108 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 SELENOMQ8WWX9 145 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.87■□□□□ 0.29
COL9A3-214ENST00000490398 L3HYPDHQ96EM0 354 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 OR8D2Q9GZM6 311 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 LYARQ9NX58 379 aaKnown RBP16.87■□□□□ 0.29
COL9A3-214ENST00000490398 LRFN1Q9P244 771 aa16.87■□□□□ 0.29
COL9A3-214ENST00000490398 PHF11Q9UIL8 331 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms