RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 SPIN4Q56A73 249 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 TTMPQ5BVD1 217 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 VWA5B1Q5TIE3 1220 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 C18orf63Q68DL7 685 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 PAPD4Q6PIY7 484 aaKnown RBP17.47■□□□□ 0.39
PTCD3-217ENST00000488801 NUDCD3Q8IVD9 361 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 HOMEZQ8IX15 550 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 EFCAB3Q8N7B9 438 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 NFAM1Q8NET5 270 aaPredicted RBP17.47■□□□□ 0.39
PTCD3-217ENST00000488801 SREK1Q8WXA9 508 aaKnown RBP17.47■□□□□ 0.39
PTCD3-217ENST00000488801 LHPPQ9H008 270 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 TUBB1Q9H4B7 451 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 MCM8Q9UJA3 840 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 HAO1Q9UJM8 370 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 DNAJC15Q9Y5T4 150 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 SPACA6W5XKT8 324 aa17.47■□□□□ 0.39
PTCD3-217ENST00000488801 NUP214P35658 2090 aaPredicted RBP17.47■□□□□ 0.39
PTCD3-217ENST00000488801 TMEM233B4DJY2 109 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 FGF17O60258 216 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 PRKRAO75569 313 aaKnown RBP17.46■□□□□ 0.39
PTCD3-217ENST00000488801 RSL1D1O76021 490 aaKnown RBP17.46■□□□□ 0.39
PTCD3-217ENST00000488801 GBAP04062 536 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 KLK1P06870 262 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 NR2F6P10588 404 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 NR1D1P20393 614 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 ITGA3P26006 1051 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 BUD31P41223 144 aaPredicted RBP17.46■□□□□ 0.39
PTCD3-217ENST00000488801 OR4D2P58180 307 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 SLC26A5P58743 744 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 CYP20A1Q6UW02 462 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 IGFL2Q6UWQ7 119 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 KBTBD2Q8IY47 623 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 APIPQ96GX9 242 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 METTL2AQ96IZ6 378 aaKnown RBP17.46■□□□□ 0.39
PTCD3-217ENST00000488801 ATP6V1G3Q96LB4 118 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 LPAR4Q99677 370 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 RPF2Q9H7B2 306 aaKnown RBP17.46■□□□□ 0.39
PTCD3-217ENST00000488801 EML4Q9HC35 981 aaKnown RBP17.46■□□□□ 0.39
PTCD3-217ENST00000488801 MMP25Q9NPA2 562 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 KCNK9Q9NPC2 374 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 ADAP2Q9NPF8 381 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 C5AR2Q9P296 337 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 PTGDR2Q9Y5Y4 395 aa17.46■□□□□ 0.39
PTCD3-217ENST00000488801 TMEM114B3SHH9 223 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 LDB3O75112 727 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 ITGAMP11215 1152 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 ICAM2P13598 275 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 PPP2R1BP30154 601 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 TIA1P31483 386 aaKnown RBP eCLIP17.45■□□□□ 0.38
PTCD3-217ENST00000488801 GPR143P51810 404 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 PGDP52209 483 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 TRA2BP62995 288 aaKnown RBP17.45■□□□□ 0.38
PTCD3-217ENST00000488801 SLC13A2Q13183 592 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 CHI3L2Q15782 390 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 EXT1Q16394 746 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 XKR7Q5GH72 579 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 H3F3CQ6NXT2 135 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 JMJD6Q6NYC1 403 aaPredicted RBP17.45■□□□□ 0.38
PTCD3-217ENST00000488801 SCIMPQ6UWF3 145 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 IGFL3Q6UXB1 125 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 CLNKQ7Z7G1 428 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 HPS6Q86YV9 775 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 PARP9Q8IXQ6 854 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 OR2T11Q8NH01 316 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 DNAJB14Q8TBM8 379 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 M1APQ8TC57 530 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 ELP5Q8TE02 316 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 TANKQ92844 425 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 THOC3Q96J01 351 aaKnown RBP17.45■□□□□ 0.38
PTCD3-217ENST00000488801 FCRL1Q96LA6 429 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 SORT1Q99523 831 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 C20orf27Q9GZN8 174 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 PRM3Q9NNZ6 103 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 VTI1BQ9UEU0 232 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 NBASA2RRP1 2371 aa17.45■□□□□ 0.38
PTCD3-217ENST00000488801 A6NL46 340 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 ITM2AO43736 263 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 KLHL41O60662 606 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 CRCPO75575 148 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 LYPLA1O75608 230 aaPredicted RBP17.44■□□□□ 0.38
PTCD3-217ENST00000488801 GRK2P25098 689 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 MAPK12P53778 367 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 AP2B1P63010 937 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 ACSM2AQ08AH3 577 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 SERTAD2Q14140 314 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 KIAA0040Q15053 153 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 ELAVL1Q15717 326 aaKnown RBP17.44■□□□□ 0.38
PTCD3-217ENST00000488801 CCNYL2Q5T2Q4 361 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 NDUFAF5Q5TEU4 345 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 ACSM2BQ68CK6 577 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 OR52E8Q6IFG1 317 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 Q6ZSR9 355 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 CLYBLQ8N0X4 340 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 APCDD1LQ8NCL9 501 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 TWIST2Q8WVJ9 160 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 TM4SF18Q96CE8 201 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 ZDHHC2Q9UIJ5 367 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 CES1P1Q9UKY3 287 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 ZNF451Q9Y4E5 1061 aa17.44■□□□□ 0.38
PTCD3-217ENST00000488801 TRAF6Q9Y4K3 522 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms