RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 A0A1W2PQ72 361 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 TTLL8A6PVC2 850 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 MAGEB17A8MXT2 336 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 H0YIG0 161 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 SOCS6O14544 535 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 NRP2O60462 931 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 SORBS2O94875 1100 aaKnown RBP16.06■□□□□ 0.16
VIM-205ENST00000485947 IDO1P14902 403 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 MAPK1P28482 360 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 STX1BP61266 288 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 HMGCS1Q01581 520 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 GALNTL6Q49A17 601 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 TMEM198Q66K66 360 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 NIPAL1Q6NVV3 410 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 JMJD6Q6NYC1 403 aaPredicted RBP16.06■□□□□ 0.16
VIM-205ENST00000485947 KIRREL2Q6UWL6 708 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.06■□□□□ 0.166e-7■■■■■ 139.2
VIM-205ENST00000485947 EFCAB3Q8N7B9 438 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 CAMKVQ8NCB2 501 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 ZNF740Q8NDX6 193 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 TUBB6Q9BUF5 446 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 CRB3Q9BUF7 120 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 CCDC106Q9BWC9 280 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 NOP53Q9NZM5 478 aaKnown RBP16.06■□□□□ 0.16
VIM-205ENST00000485947 SLC12A4Q9UP95 1085 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 CAPN7Q9Y6W3 813 aa16.06■□□□□ 0.16
VIM-205ENST00000485947 NBPF19A0A087WUL8 3843 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 A6NL46 340 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 HAT1O14929 419 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 OR1F1O43749 312 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 CLEC3AO75596 197 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 ALDOCP09972 364 aaKnown RBP16.05■□□□□ 0.16
VIM-205ENST00000485947 PTX3P26022 381 aaPredicted RBP16.05■□□□□ 0.16
VIM-205ENST00000485947 AVPR1BP47901 424 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 RPS13P62277 151 aaKnown RBP16.05■□□□□ 0.16
VIM-205ENST00000485947 AP2B1P63010 937 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 RPL38P63173 70 aaKnown RBP16.05■□□□□ 0.16
VIM-205ENST00000485947 KLC1Q07866 573 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 CUL3Q13618 768 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 KRT72Q14CN4 511 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 SPIN4Q56A73 249 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 CCDC121Q6ZUS5 278 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 YTHDF3Q7Z739 585 aaKnown RBP16.05■□□□□ 0.16
VIM-205ENST00000485947 FAM9CQ8IZT9 166 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 ANKRD53Q8N9V6 530 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 MFSD9Q8NBP5 474 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 GALNT11Q8NCW6 608 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 TRPV3Q8NET8 790 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.05■□□□□ 0.16
VIM-205ENST00000485947 BRINP2Q9C0B6 783 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 ZNF552Q9H707 407 aaPredicted RBP16.05■□□□□ 0.16
VIM-205ENST00000485947 PRM3Q9NNZ6 103 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 AIG1Q9NVV5 245 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 TMEM45AQ9NWC5 275 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 SIRT5Q9NXA8 310 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 GIMAP2Q9UG22 337 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 FBXL4Q9UKA2 621 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 EIF3LQ9Y262 564 aaKnown RBP16.05■□□□□ 0.16
VIM-205ENST00000485947 COPG1Q9Y678 874 aaKnown RBP16.05■□□□□ 0.16
VIM-205ENST00000485947 MAU2Q9Y6X3 613 aa16.05■□□□□ 0.16
VIM-205ENST00000485947 MDC1Q14676 2089 aaKnown RBP16.05■□□□□ 0.16
VIM-205ENST00000485947 TEP1Q99973 2627 aaKnown RBP16.04■□□□□ 0.16
VIM-205ENST00000485947 FEZF1A0PJY2 475 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 SEC22BO75396 215 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 SEMA3DO95025 777 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 MED26O95402 600 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 NSA2O95478 260 aaKnown RBP16.04■□□□□ 0.16
VIM-205ENST00000485947 HPP00738 406 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 PRPS2P11908 318 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 IL10P22301 178 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 PRDX6P30041 224 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 BCL6P41182 706 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 SKP1P63208 163 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 KIAA0040Q15053 153 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 HKDC1Q2TB90 917 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 VN1R5Q7Z5H4 357 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 ZADH2Q8N4Q0 377 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 OR11G2Q8NGC1 345 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 TM4SF19Q96DZ7 209 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 MMABQ96EY8 250 aaPredicted RBP16.04■□□□□ 0.16
VIM-205ENST00000485947 FCRL1Q96LA6 429 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 CENPKQ9BS16 269 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 MS4A8Q9BY19 250 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 LHPPQ9H008 270 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 SOX17Q9H6I2 414 aaPredicted RBP16.04■□□□□ 0.16
VIM-205ENST00000485947 SLAMF7Q9NQ25 335 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 TRPC4Q9UBN4 977 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 C3orf18Q9UK00 162 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 B3GNT3Q9Y2A9 372 aa16.04■□□□□ 0.16
VIM-205ENST00000485947 CAPN14A8MX76 684 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 FOXS1O43638 330 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 LCMT2O60294 686 aaKnown RBP16.03■□□□□ 0.16
VIM-205ENST00000485947 MYO1DO94832 1006 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 UBOX5O94941 541 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 ITGA3P26006 1051 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 ARFIP1P53367 373 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 EMP2P54851 167 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 ACSM2AQ08AH3 577 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 KLF10Q13118 480 aa16.03■□□□□ 0.16
VIM-205ENST00000485947 UBAP2LQ14157 1087 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms