RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 KLHL6Q8WZ60 621 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 TMEM19Q96HH6 336 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 VN1R3Q9BXE9 311 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 DPEP2Q9H4A9 486 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 IRAK3Q9Y616 596 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ANK1P16157 1881 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 RGPD3A6NKT7 1758 aaPredicted RBP11.11□□□□□ -0.63
NPHP4-204ENST00000460696 RGPD4Q7Z3J3 1758 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 LCTP09848 1927 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 TCRBV5S2A0A599 114 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 GPR37L1O60883 481 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 KHKP50053 298 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ID2Q02363 134 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 CBX3Q13185 183 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF234Q14588 700 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 TOR1AIP1Q5JTV8 583 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 KIAA1161Q6NSJ0 714 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 CBLL1Q75N03 491 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 DPPA4Q7L190 304 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF438Q7Z4V0 828 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 DUS3LQ96G46 650 aaKnown RBP11.11□□□□□ -0.63
NPHP4-204ENST00000460696 MAPKAP1Q9BPZ7 522 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 SLC6A16Q9GZN6 736 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ZBP1Q9H171 429 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ACTL8Q9H568 366 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 DMRT3Q9NQL9 472 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 MAFFQ9ULX9 164 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 RPL36Q9Y3U8 105 aaKnown RBP11.11□□□□□ -0.63
NPHP4-204ENST00000460696 PEX16Q9Y5Y5 336 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 CACNA1CQ13936 2221 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 VEGFDO43915 354 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ITGA1P56199 1179 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 FBXW4P57775 412 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 GABARAPL2P60520 117 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ADARB1P78563 741 aaKnown RBP11.11□□□□□ -0.63
NPHP4-204ENST00000460696 LARS2Q15031 903 aaKnown RBP11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF311Q5JNZ3 666 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 SNX29P2Q8IUI4 249 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 SIX5Q8N196 739 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 OR8K5Q8NH50 307 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 UBTD2Q8WUN7 234 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 OR5P2Q8WZ92 322 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 CCDC115Q96NT0 180 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 FCRL4Q96PJ5 515 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 TMEM121BQ9BXQ6 578 aaPredicted RBP11.11□□□□□ -0.63
NPHP4-204ENST00000460696 AMBRA1Q9C0C7 1298 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 MALT1Q9UDY8 824 aa11.11□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF860A6NHJ4 632 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 ANHXE9PGG2 379 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 ACOX3O15254 700 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 ATP6V1G1O75348 118 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 CYP17A1P05093 508 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 PRR35P0CG20 571 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 PRG2P13727 222 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 PSMB5P28074 263 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 PRLHRP49683 370 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 DAPP51397 102 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 MLLT10P55197 1068 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 HNRNPA1L2Q32P51 320 aaKnown RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 NRSN1Q8IZ57 195 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF655Q8N720 491 aaPredicted RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 DRAXINQ8NBI3 349 aaPredicted RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 NDNFQ8TB73 568 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 RPL3LQ92901 407 aaKnown RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 DPH7Q9BTV6 452 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 GTPBP2Q9BX10 602 aaKnown RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 BRF2Q9HAW0 419 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 SLC6A13Q9NSD5 602 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 GMEB2Q9UKD1 530 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 PIAS3Q9Y6X2 628 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 CPSF4LA6NMK7 179 aaKnown RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 OR52A4PA6NMU1 304 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 TMX2-CTNND1H3BSU7 103 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 ALPPP05187 535 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 HNRNPA1P09651 372 aaKnown RBP eCLIP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 RPL4P36578 427 aaKnown RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 CCR2P41597 374 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 RNF144AP50876 292 aaPredicted RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 ILF3Q12906 894 aaKnown RBP eCLIP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 SPCS2Q15005 226 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 MAD2L1BPQ15013 274 aaPredicted RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 PYCR3Q53H96 274 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF691Q5VV52 312 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 PIGXQ8TBF5 258 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 SMARCD2Q92925 531 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 SIPA1Q96FS4 1042 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 ZNF300Q96RE9 604 aaPredicted RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 TBX5Q99593 518 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 OR51V1Q9H2C8 321 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 BTNL2Q9UIR0 455 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 OR51B4Q9Y5P0 310 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 J3KTA2 159 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 NUDT14O95848 222 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 CNR2P34972 360 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 B4GALNT1Q00973 533 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 SLAMF1Q13291 335 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 ZNHIT3Q15649 155 aaPredicted RBP11.1□□□□□ -0.63
NPHP4-204ENST00000460696 NEK10Q6ZWH5 1172 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 CACTIN-AS1Q8N1I8 211 aa11.1□□□□□ -0.63
NPHP4-204ENST00000460696 FAM46DQ8NEK8 389 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms