RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 DEFB126Q9BYW3 111 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 MBNL1Q9NR56 388 aaKnown RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CUEDC1Q9NWM3 386 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 RHCGQ9UBD6 479 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 NKX1-2Q9UD57 310 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 POFUT2Q9Y2G5 429 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 IFT52Q9Y366 437 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ARHGEF9O43307 516 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CLEC3AO75596 197 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CER1O95813 267 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CAPN3P20807 821 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 GSTM3P21266 225 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 KDELR2P33947 212 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 AFF3P51826 1226 aaKnown RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CEACAM7Q14002 265 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 SGCBQ16585 318 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 MSANTD1Q6ZTZ1 278 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 LINC00471Q8N535 108 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 LILRA3Q8N6C8 439 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 KLHL6Q8WZ60 621 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 EDAQ92838 391 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 SLC6A18Q96N87 628 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 NODALQ96S42 347 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 LYSMD1Q96S90 227 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 EPYCQ99645 322 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 G6PC3Q9BUM1 346 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 PITHD1Q9GZP4 211 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 KCNN2Q9H2S1 579 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 STARD5Q9NSY2 213 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 LYNP07948 512 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 GP1BBP13224 206 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 SDC1P18827 310 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 IMPA1P29218 277 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ADAM15Q13444 863 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 GBX1Q14549 363 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 C5orf22Q49AR2 442 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ARMC4Q5T2S8 1044 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 OGFOD2Q6N063 350 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 MCATQ8IVS2 390 aaKnown RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 SLC44A3Q8N4M1 653 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 AQP11Q8NBQ7 271 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 C7orf57Q8NEG2 295 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 OR13H1Q8NG92 308 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 C3orf30Q96M34 536 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 TM9SF3Q9HD45 589 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 TRNAU1APQ9NX07 287 aaKnown RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 PADI2Q9Y2J8 665 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 MED31Q9Y3C7 131 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 CEP290O15078 2479 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 HMGN1P05114 100 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 HNRNPCP07910 306 aaKnown RBP eCLIP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 HBQ1P09105 142 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 DPP6P42658 865 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 HK3P52790 923 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ASTLQ6HA08 431 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 MZT2AQ6P582 158 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 LARP4Q71RC2 724 aaKnown RBP eCLIP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 HMGN2P46Q86SG4 172 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 CARM1Q86X55 608 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 GHDCQ8N2G8 530 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 PACRGLQ8N7B6 248 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ACOT4Q8N9L9 421 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 GATSQ8NAP1 163 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 OR2L8Q8NGY9 312 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 OR56A3Q8NH54 315 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 GAL3ST3Q96A11 431 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 RSL24D1Q9UHA3 163 aaKnown RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 TLR4O00206 839 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 CHST10O43529 356 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF821O75541 412 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ETFAP13804 333 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 NDUFV2P19404 249 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 PRKACGP22612 351 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 MAZP56270 477 aaKnown RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 LAPTM4AQ15012 233 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 BCL7AQ4VC05 210 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 CXXC5Q7LFL8 322 aaKnown RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 NAT6Q93015 286 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 TMEM125Q96AQ2 219 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 SLC7A6OSQ96CW6 309 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 SPATA9Q9BWV2 254 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 CD320Q9NPF0 282 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 TM7SF3Q9NS93 570 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 GEMIN8Q9NWZ8 242 aaKnown RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 STOML2Q9UJZ1 356 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 HS3ST3A1Q9Y663 406 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 A0A0A6YYC8 382 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 I3L1I5 382 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-213ENST00000448038 GPR37L1O60883 481 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 TRAPPC6AO75865 159 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 SLCO2B1O94956 709 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ACVR2AP27037 513 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 BMP8BP34820 402 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 ACVR1Q04771 509 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 C16orf72Q14CZ0 275 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 KLHL24Q6TFL4 600 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 SBSNQ6UWP8 590 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 BMP8AQ7Z5Y6 402 aa7.06□□□□□ -1.28
SYNE1-213ENST00000448038 RNF175Q8N4F7 328 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms