RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CLDN4O14493 209 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 ITM2AO43736 263 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 LDB3O75112 727 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 HSPA4LO95757 839 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 PDGFAP04085 211 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 NEFHP12036 1026 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 BUD31P41223 144 aaPredicted RBP11.7□□□□□ -0.54
SKA1-203ENST00000417656 MAPK12P53778 367 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 BTKQ06187 659 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 SOWAHCQ53LP3 525 aaPredicted RBP11.7□□□□□ -0.54
SKA1-203ENST00000417656 CCNYL2Q5T2Q4 361 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 GOLGA6L1Q8N7Z2 621 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 TWIST2Q8WVJ9 160 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 LPAR4Q99677 370 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 TUBB6Q9BUF5 446 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 NUDT9Q9BW91 350 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 EBPLQ9BY08 206 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 TUBB1Q9H4B7 451 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 ZNF395Q9H8N7 513 aaPredicted RBP11.7□□□□□ -0.54
SKA1-203ENST00000417656 ZNF71Q9NQZ8 489 aaPredicted RBP11.7□□□□□ -0.54
SKA1-203ENST00000417656 ZNF446Q9NWS9 450 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 MS4A12Q9NXJ0 267 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 GPR83Q9NYM4 423 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 TUBD1Q9UJT1 453 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 DNAJC15Q9Y5T4 150 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 ATRXP46100 2492 aa11.7□□□□□ -0.54
SKA1-203ENST00000417656 GLOD5A6NK44 160 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 A8MUA0 341 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 PIP5K1BO14986 540 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 PROM1O43490 865 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 PCDH7O60245 1069 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 FGF17O60258 216 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 SKAP2O75563 359 aaPredicted RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 RSL1D1O76021 490 aaKnown RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 CHEK2O96017 543 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 PRB1P04280 392 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 TIA1P31483 386 aaKnown RBP eCLIP11.69□□□□□ -0.542e-52■■■■□ 23
SKA1-203ENST00000417656 SLC18A1P54219 525 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 ABCE1P61221 599 aaKnown RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 RAE1P78406 368 aaKnown RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 ACTN3Q08043 901 aaPredicted RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 ACSM2AQ08AH3 577 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 MYBPC3Q14896 1274 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 BTBD16Q32M84 506 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 LACTB2Q53H82 288 aaPredicted RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 SPIN4Q56A73 249 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 SPDYAQ5MJ70 313 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 ACSM2BQ68CK6 577 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 TRIM46Q7Z4K8 759 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 DDIASQ8IXT1 998 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 KBTBD2Q8IY47 623 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 MMP21Q8N119 569 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 OR2T11Q8NH01 316 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 CHTF18Q8WVB6 975 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 UCN3Q969E3 161 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 ANKRD9Q96BM1 317 aaPredicted RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 THOC3Q96J01 351 aaKnown RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 IMMP1LQ96LU5 166 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 RPF2Q9H7B2 306 aaKnown RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 PNO1Q9NRX1 252 aaKnown RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 ZDHHC2Q9UIJ5 367 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 MCM8Q9UJA3 840 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 G3BP2Q9UN86 482 aaKnown RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 TRAF6Q9Y4K3 522 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 PCDHGA9Q9Y5G4 932 aaKnown RBP11.69□□□□□ -0.54
SKA1-203ENST00000417656 DOCK10Q96BY6 2186 aa11.69□□□□□ -0.54
SKA1-203ENST00000417656 CPAMD8Q8IZJ3 1885 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 BLACEA4D250 179 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 SAGE2PA6NJ88 616 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 CTNSO60931 367 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 SERPINA7P05543 415 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 FGF4P08620 206 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 LINC00032P0C843 101 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 PRR35P0CG20 571 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 ITGAMP11215 1152 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 GRK2P25098 689 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 TLX1P31314 330 aaPredicted RBP11.68□□□□□ -0.54
SKA1-203ENST00000417656 PGDP52209 483 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 SOX8P57073 446 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 SLC26A5P58743 744 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 FOLH1Q04609 750 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 BST1Q10588 318 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 STX4Q12846 297 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 NR6A1Q15406 480 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 UGT3A2Q3SY77 523 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 NDUFAF5Q5TEU4 345 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 VWA5B1Q5TIE3 1220 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 IRAK1BP1Q5VVH5 260 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 PLAG1Q6DJT9 500 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 OR52E8Q6IFG1 317 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 RIPOR1Q6ZS17 1223 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 RNF165Q6ZSG1 346 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 OR4N5Q8IXE1 308 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 CLYBLQ8N0X4 340 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 ZNF781Q8N8C0 355 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 LSM14AQ8ND56 463 aaKnown RBP11.68□□□□□ -0.54
SKA1-203ENST00000417656 BRIX1Q8TDN6 353 aaKnown RBP11.68□□□□□ -0.54
SKA1-203ENST00000417656 SORT1Q99523 831 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 C20orf27Q9GZN8 174 aa11.68□□□□□ -0.54
SKA1-203ENST00000417656 LHPPQ9H008 270 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms