RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 GNG10P50151 68 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 NUDT6P53370 316 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 TPI1P60174 286 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 IRF9Q00978 393 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 ILKQ13418 452 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 KIAA0040Q15053 153 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PCBP2Q15366 365 aaKnown RBP eCLIP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 TBCEQ15813 527 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 SMN1Q16637 294 aaKnown RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 UNC50Q53HI1 259 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 FBXO48Q5FWF7 155 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 AVPI1Q5T686 147 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 NBPF12Q5TAG4 269 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PRAMEF13Q5VWM6 474 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 RNLSQ5VYX0 342 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 SCYL2Q6P3W7 929 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 KANSL1Q7Z3B3 1105 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 CALHM3Q86XJ0 350 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 DENND1CQ8IV53 801 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 ZFP82Q8N141 532 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 GPC2Q8N158 579 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 MIER2Q8N344 545 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 NPWQ8N729 165 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 RTL3Q8N8U3 475 aaKnown RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 L3MBTL4Q8NA19 623 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 HGDQ93099 445 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 MTERF3Q96E29 417 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 SMARCD1Q96GM5 515 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 ITCHQ96J02 903 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 ZC3H10Q96K80 434 aaKnown RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 MEGF10Q96KG7 1140 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 LGMNQ99538 433 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 SPSB2Q99619 263 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PITX2Q99697 317 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 ACBD6Q9BR61 282 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 DUSP26Q9BV47 211 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 COLEC11Q9BWP8 271 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 AP5M1Q9H0R1 490 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 RIBC2Q9H4K1 309 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 CDCP1Q9H5V8 836 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 TASP1Q9H6P5 420 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 GPR160Q9UJ42 338 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 NCKAP1Q9Y2A7 1128 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 CMAHPQ9Y471 501 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 QSOX1O00391 747 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 NR5A2O00482 541 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PPP6CO00743 305 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 IRAK2O43187 625 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 CBR1P16152 277 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PTBP1P26599 531 aaKnown RBP eCLIP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 CRYBB1P53674 252 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 CDH4P55283 916 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 YBX1P67809 324 aaKnown RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 TIAL1Q01085 375 aaKnown RBP eCLIP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 LIPEQ05469 1076 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 RING1Q06587 406 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 CRYZQ08257 329 aaKnown RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 TAF1AQ15573 450 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 SNAPC1Q16533 368 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 KLHL22Q53GT1 634 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 ARHGAP11AQ6P4F7 1023 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 SPESP1Q6UW49 350 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 TMEM107Q6UX40 140 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 C3P1Q6ZMU1 363 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 ZFAND4Q86XD8 727 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 TTC29Q8NA56 475 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 DTD1Q8TEA8 209 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 BARHL1Q9BZE3 327 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 SUV39H2Q9H5I1 410 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 OPA3Q9H6K4 179 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PLCXD1Q9NUJ7 323 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 KLHL8Q9P2G9 620 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 SEC14L3Q9UDX4 400 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 LEF1Q9UJU2 399 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 NDRG4Q9ULP0 352 aaKnown RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 CA14Q9ULX7 337 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PCDHB10Q9UN67 800 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PPIEQ9UNP9 301 aaKnown RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PCDHB9Q9Y5E1 797 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 TRPV2Q9Y5S1 764 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 DENND4AQ7Z401 1863 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PRAMEF33A0A0G2JMD5 474 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 A6NCN8 305 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 NEDD8-MDP1E9PL57 170 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 PRAMEF10O60809 474 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 RAD17O75943 681 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 FGF1P05230 155 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 MMP3P08254 477 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 GJA1P17302 382 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 LBPP18428 481 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 HRH2P25021 359 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 STOMP27105 288 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 NMBRP28336 390 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 SLC1A2P43004 574 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 GMPSP49915 693 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 YBEYP58557 167 aaPredicted RBP6.36□□□□□ -1.39
ZNF540-201ENST00000316433 ECH1Q13011 328 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 LCP2Q13094 533 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 GRB14Q14449 540 aa6.36□□□□□ -1.39
ZNF540-201ENST00000316433 GANABQ14697 944 aaKnown RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms