RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 TDP1Q9NUW8 608 aa9.65□□□□□ -0.87
COPB1-201ENST00000249923 KLHL3Q9UH77 587 aa9.65□□□□□ -0.87
COPB1-201ENST00000249923 ARID1AO14497 2285 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 SSX4O60224 188 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 CATP04040 527 aaKnown RBP9.64□□□□□ -0.87
COPB1-201ENST00000249923 ELFN1P0C7U0 828 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 LSM11P83369 360 aaKnown RBP eCLIP9.64□□□□□ -0.87
COPB1-201ENST00000249923 NFE2L1Q14494 772 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 PTGES3Q15185 160 aaKnown RBP9.64□□□□□ -0.87
COPB1-201ENST00000249923 AGAP7PQ5VUJ5 663 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 SVOPQ8N4V2 548 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 AMER2Q8N7J2 671 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 GPR32P1Q8NGA4 272 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 RSPRY1Q96DX4 576 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 MAGEB10Q96LZ2 347 aaPredicted RBP9.64□□□□□ -0.87
COPB1-201ENST00000249923 FAM129BQ96TA1 746 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 RAD9AQ99638 391 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 SDHCQ99643 169 aaPredicted RBP9.64□□□□□ -0.87
COPB1-201ENST00000249923 OR2AG1Q9H205 316 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 LHX9Q9NQ69 397 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 SPASTQ9UBP0 616 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 DUSP12Q9UNI6 340 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 PRAMEF27A3QJZ7 478 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 EFCAB10A6NFE3 127 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 PCP4L1A6NKN8 68 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 H3BM21 787 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 RFXAPO00287 272 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 RTCAO00442 366 aaKnown RBP9.64□□□□□ -0.87
COPB1-201ENST00000249923 MRPS14O60783 128 aaKnown RBP9.64□□□□□ -0.87
COPB1-201ENST00000249923 GPR37L1O60883 481 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 PAPLNO95428 1278 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 CISD3P0C7P0 127 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 CYP2A6P11509 494 aaPredicted RBP9.64□□□□□ -0.87
COPB1-201ENST00000249923 ACADLP28330 430 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 HOXD11P31277 338 aaPredicted RBP9.64□□□□□ -0.87
COPB1-201ENST00000249923 EPHA5P54756 1037 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 ST3GAL4Q11206 333 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 SELENBP1Q13228 472 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 SSX1Q16384 188 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 CRB2Q5IJ48 1285 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 ANXA8L1Q5VT79 327 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 SDE2Q6IQ49 451 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 C19orf48Q6RUI8 117 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 RBM45Q8IUH3 476 aaKnown RBP9.64□□□□□ -0.87
COPB1-201ENST00000249923 SLC35B4Q969S0 331 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 SLC6A18Q96N87 628 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 IL4I1Q96RQ9 567 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 CNPPD1Q9BV87 410 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 SERHL2Q9H4I8 314 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 UCKL1Q9NWZ5 548 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 TOR4AQ9NXH8 423 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 MS4A12Q9NXJ0 267 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 MAFFQ9ULX9 164 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 KCNE2Q9Y6J6 123 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 DSPPQ9NZW4 1301 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 CKAP5Q14008 2032 aa9.64□□□□□ -0.87
COPB1-201ENST00000249923 TRBV4-1A0A0J9YWV2 114 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 FOXE1O00358 373 aaPredicted RBP9.63□□□□□ -0.87
COPB1-201ENST00000249923 ADAMDEC1O15204 470 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 ALOX5P09917 674 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 FEN1P39748 380 aaKnown RBP9.63□□□□□ -0.87
COPB1-201ENST00000249923 HMGA2P52926 109 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 CDK6Q00534 326 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 FCHO2Q0JRZ9 810 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 STARD3Q14849 445 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 TEAD4Q15561 434 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 IFI44LQ53G44 452 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 GCNT6Q5T4J0 391 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 METTL4Q8N3J2 472 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 ANKRD53Q8N9V6 530 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 PHF21AQ96BD5 680 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 DTD2Q96FN9 168 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 TRMT61AQ96FX7 289 aaKnown RBP9.63□□□□□ -0.87
COPB1-201ENST00000249923 ZDHHC5Q9C0B5 715 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.63□□□□□ -0.87
COPB1-201ENST00000249923 SNTG1Q9NSN8 517 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 WBP11Q9Y2W2 641 aaKnown RBP9.63□□□□□ -0.87
COPB1-201ENST00000249923 PRUNE2Q8WUY3 3088 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 ASCC3Q8N3C0 2202 aaKnown RBP9.63□□□□□ -0.87
COPB1-201ENST00000249923 AGAP5A6NIR3 686 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 WASHC1A8K0Z3 465 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 PRRT4C9JH25 899 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 PLPP1O14494 284 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 C1GALT1C1LP0DN25 315 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 CHMP24386 653 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 SSTR4P31391 388 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 CTSKP43235 329 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 RGS6P49758 472 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 PPP5CP53041 499 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 C2orf80Q0P641 193 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 ZNF404Q494X3 552 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 PPP2R2DQ66LE6 453 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 WASH2PQ6VEQ5 465 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 OLIG3Q7RTU3 272 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 BCDIN3DQ7Z5W3 292 aaKnown RBP9.63□□□□□ -0.87
COPB1-201ENST00000249923 LACC1Q8IV20 430 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 CYP4Z2PQ8N1L4 340 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 TRIM43Q96BQ3 446 aaPredicted RBP9.63□□□□□ -0.87
COPB1-201ENST00000249923 MYNNQ9NPC7 610 aa9.63□□□□□ -0.87
COPB1-201ENST00000249923 ZDHHC4Q9NPG8 344 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms