RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SLC1A4P43007 532 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ANXA11P50995 505 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ERVFRD-1P60508 538 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TXNL4AP83876 142 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF529Q6P280 563 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SLC46A3Q7Z3Q1 461 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM200AQ86VY9 491 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF440Q8IYI8 595 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CACNG8Q8WXS5 425 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PIGBQ92521 554 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MYLPFQ96A32 169 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RCC1LQ96I51 464 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RNF2Q99496 336 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM231Q9H6L2 316 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PTGFRNQ9P2B2 879 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SLC17A6Q9P2U8 582 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 HECAQ9UBI9 543 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OPTCQ9UBM4 332 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CLEC4EQ9ULY5 219 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SAMD4AQ9UPU9 718 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 HEMK1Q9Y5R4 338 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 DMRT1Q9Y5R6 373 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 BDP1A6H8Y1 2624 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MGAT4DA6NG13 374 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PDHXO00330 501 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 DNPH1O43598 174 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 GADD45GO95257 159 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MMP3P08254 477 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CYP2D6P10635 497 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 COL9A1P20849 921 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CDH13P55290 713 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OSTNP61366 133 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FAM110CQ1W6H9 321 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 NDUFAF6Q330K2 333 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 LYRM7Q5U5X0 104 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FMR1NBQ8N0W7 255 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PQLC1Q8N2U9 271 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 C11orf42Q8N5U0 333 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR5B17Q8NGF7 314 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TAAR9Q96RI9 348 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SLC52A2Q9HAB3 445 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TPT1P8Q9HAU6 139 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ERVV-1B6SEH8 477 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 EFSO43281 561 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 GDF9O60383 454 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ITGA3P26006 1051 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CASP7P55210 303 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TMPRSS3P57727 454 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 B4GALNT1Q00973 533 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SLC9A9Q8IVB4 645 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR10R2Q8NGX6 335 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 C1orf54Q8WWF1 131 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SMARCD1Q96GM5 515 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TOLLIPQ9H0E2 274 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FBXO34Q9NWN3 711 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FAM53CQ9NYF3 392 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SIX4Q9UIU6 781 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CASP8AP2Q9UKL3 1982 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 TVP23AA6NH52 213 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CUTAO60888 179 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 HCKP08631 526 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SERPINA2P20848 420 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MNDAP41218 407 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SORDQ00796 357 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 E2F1Q01094 437 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 GXYLT1Q4G148 440 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 GCNT7Q6ZNI0 430 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 COX15Q7KZN9 410 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PDSS2Q86YH6 399 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FBXL16Q8N461 479 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FAM83FQ8NEG4 500 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 THTPAQ9BU02 230 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 WWTR1Q9GZV5 400 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FN3KQ9H479 309 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SPAG4Q9NPE6 437 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MUC4Q99102 2169 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 NCOA6Q14686 2063 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ENTPD6O75354 484 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RPN2P04844 631 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR8U8P0C7N1 319 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 NTF3P20783 257 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 THBS4P35443 961 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RPS19P39019 145 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ADARB1P78563 741 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CDH17Q12864 832 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SNAPC1Q16533 368 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PDZD11Q5EBL8 140 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CES4AQ5XG92 561 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FUT10Q6P4F1 479 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CNTN4Q8IWV2 1026 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 FAM160A2Q8N612 972 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 C12orf29Q8N999 325 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SLC44A5Q8NCS7 719 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR8U1Q8NH10 309 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RHEBL1Q8TAI7 183 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF431Q8TF32 576 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 UFD1Q92890 307 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 GATA6Q92908 595 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 REEP6Q96HR9 211 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms