RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PCLAFQ15004 111 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 BTBD16Q32M84 506 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 PAPD4Q6PIY7 484 aaKnown RBP19.44■□□□□ 0.7
CLN3-240ENST00000631023 FRMD7Q6ZUT3 714 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 PAGE2Q7Z2X7 111 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 GPR180Q86V85 440 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 NUDT13Q86X67 352 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 SREK1Q8WXA9 508 aaKnown RBP19.44■□□□□ 0.7
CLN3-240ENST00000631023 NECTIN3Q9NQS3 549 aa19.44■□□□□ 0.7
CLN3-240ENST00000631023 FARSBQ9NSD9 589 aaKnown RBP19.44■□□□□ 0.7
CLN3-240ENST00000631023 CPAMD8Q8IZJ3 1885 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 MANBAO00462 879 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 UQCRHP07919 91 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 HSD3B1P14060 373 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 HSD3B2P26439 372 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 ZNF33BQ06732 778 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 ISLR2Q6UXK2 745 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 ZNF605Q86T29 641 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 SCUBE1Q8IWY4 988 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 M1APQ8TC57 530 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 AGAP11Q8TF27 550 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 CSF3RQ99062 836 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 WDR77Q9BQA1 342 aaPredicted RBP19.43■□□□□ 0.7
CLN3-240ENST00000631023 LYARQ9NX58 379 aaKnown RBP19.43■□□□□ 0.7
CLN3-240ENST00000631023 SLC17A7Q9P2U7 560 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 SLC12A4Q9UP95 1085 aa19.43■□□□□ 0.7
CLN3-240ENST00000631023 CRCPO75575 148 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 STX4Q12846 297 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 CRB2Q5IJ48 1285 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 BEND6Q5SZJ8 279 aaPredicted RBP19.42■□□□□ 0.7
CLN3-240ENST00000631023 IGFL3Q6UXB1 125 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 ZADH2Q8N4Q0 377 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 EFCAB3Q8N7B9 438 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 LMF1Q96S06 567 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 TRMOQ9BU70 441 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 ZNF717Q9BY31 904 aaPredicted RBP19.42■□□□□ 0.7
CLN3-240ENST00000631023 EPS8L2Q9H6S3 715 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 ADAM29Q9UKF5 820 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 ZNF462Q96JM2 2506 aa19.42■□□□□ 0.7
CLN3-240ENST00000631023 A0A0A6YYD5 115 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 ARHGAP10A1A4S6 786 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 CTIFO43310 598 aaKnown RBP19.41■□□□□ 0.7
CLN3-240ENST00000631023 SUV39H1O43463 412 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 TYROBPO43914 113 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 EEDO75530 441 aaKnown RBP19.41■□□□□ 0.7
CLN3-240ENST00000631023 FAM58BPP0C7Q3 252 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 CREB1P16220 341 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 BUD31P41223 144 aaPredicted RBP19.41■□□□□ 0.7
CLN3-240ENST00000631023 HNRNPFP52597 415 aaKnown RBP19.41■□□□□ 0.7
CLN3-240ENST00000631023 CSTF3Q12996 717 aaKnown RBP19.41■□□□□ 0.7
CLN3-240ENST00000631023 GBP7Q8N8V2 638 aaPredicted RBP19.41■□□□□ 0.7
CLN3-240ENST00000631023 TMEM52Q8NDY8 209 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 BRIX1Q8TDN6 353 aaKnown RBP19.41■□□□□ 0.7
CLN3-240ENST00000631023 PGM2Q96G03 612 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 CNDP1Q96KN2 507 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 STMN4Q9H169 189 aaPredicted RBP19.41■□□□□ 0.7
CLN3-240ENST00000631023 WDR41Q9HAD4 459 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 PTGFRNQ9P2B2 879 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 VPS29Q9UBQ0 182 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 TEKT2Q9UIF3 430 aa19.41■□□□□ 0.7
CLN3-240ENST00000631023 UBFD1O14562 309 aaKnown RBP19.4■□□□□ 0.7
CLN3-240ENST00000631023 ITGAMP11215 1152 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 PPP2R1BP30154 601 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 ALDH3A1P30838 453 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 SERTAD2Q14140 314 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 MRM1Q6IN84 353 aaKnown RBP19.4■□□□□ 0.7
CLN3-240ENST00000631023 ATG14Q6ZNE5 492 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 PRICKLE2Q7Z3G6 844 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 CLNKQ7Z7G1 428 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 HOMEZQ8IX15 550 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 METTL4Q8N3J2 472 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 PSMF1Q92530 271 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 TANKQ92844 425 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 GATA5Q9BWX5 397 aaPredicted RBP19.4■□□□□ 0.7
CLN3-240ENST00000631023 MRPL1Q9BYD6 325 aaKnown RBP19.4■□□□□ 0.7
CLN3-240ENST00000631023 RPF2Q9H7B2 306 aaKnown RBP19.4■□□□□ 0.7
CLN3-240ENST00000631023 KCNK13Q9HB14 408 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 SSU72Q9NP77 194 aaKnown RBP19.4■□□□□ 0.7
CLN3-240ENST00000631023 MMP25Q9NPA2 562 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 PNO1Q9NRX1 252 aaKnown RBP19.4■□□□□ 0.7
CLN3-240ENST00000631023 TIMM22Q9Y584 194 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 PROM1O43490 865 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 KLK1P06870 262 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 CELA2AP08217 269 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 SLC26A5P58743 744 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 TNFRSF17Q02223 184 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 BIKQ13323 160 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 MFAP5Q13361 173 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 TERF2Q15554 542 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 TCHHL1Q5QJ38 904 aaPredicted RBP19.4■□□□□ 0.7
CLN3-240ENST00000631023 CCNYL2Q5T2Q4 361 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 EXOC3L1Q86VI1 746 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 SIRT6Q8N6T7 355 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 HBEGFQ99075 208 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 ALOXE3Q9BYJ1 711 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 ADAP2Q9NPF8 381 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 ATG4BQ9Y4P1 393 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 ASB4Q9Y574 426 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 ACTL7BQ9Y614 415 aa19.4■□□□□ 0.7
CLN3-240ENST00000631023 RP1L1Q8IWN7 2480 aaPredicted RBP19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms