RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 PCSK4Q6UW60 755 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 SCIMPQ6UWF3 145 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 ATG14Q6ZNE5 492 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 RNF165Q6ZSG1 346 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 NDUFAF7Q7L592 441 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 TRIM46Q7Z4K8 759 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 CPEB2Q7Z5Q1 589 aaKnown RBP19.08■□□□□ 0.64
PTCD3-220ENST00000627371 ANKRD37Q7Z713 158 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 GPR180Q86V85 440 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 SCUBE1Q8IWY4 988 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 EFCAB3Q8N7B9 438 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 CLEC1AQ8NC01 280 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 MGARPQ8TDB4 240 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 ZNF700Q9H0M5 742 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 PRTFDC1Q9NRG1 225 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 ASB4Q9Y574 426 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 BSNQ9UPA5 3926 aa19.08■□□□□ 0.64
PTCD3-220ENST00000627371 HMGB1P1B2RPK0 211 aaPredicted RBP19.07■□□□□ 0.64
PTCD3-220ENST00000627371 DNAJB5O75953 348 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 GBAP04062 536 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 KLK1P06870 262 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 FAM58BPP0C7Q3 252 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 NEFHP12036 1026 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 MAOAP21397 527 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 BGNP21810 368 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 TNFRSF17Q02223 184 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 PCOLCEQ15113 449 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 SPIN4Q56A73 249 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 SH2D4BQ5SQS7 431 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 CLYBLQ8N0X4 340 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 C1orf52Q8N6N3 182 aaKnown RBP19.07■□□□□ 0.64
PTCD3-220ENST00000627371 CHTF18Q8WVB6 975 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 ADNPQ9H2P0 1102 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 ATP13A2Q9NQ11 1180 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 NECTIN3Q9NQS3 549 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 RIC8BQ9NVN3 520 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 ZNF446Q9NWS9 450 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 FIS1Q9Y3D6 152 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 TRAF6Q9Y4K3 522 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 ATG4BQ9Y4P1 393 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 DNAJC15Q9Y5T4 150 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 PIEZO2Q9H5I5 2752 aa19.07■□□□□ 0.64
PTCD3-220ENST00000627371 CHD6Q8TD26 2715 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 NSG1A0A0A6YYJ2 146 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 TCRBV16S1A1N1A0A5B0 115 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 ARHGAP10A1A4S6 786 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 SNUPNO95149 360 aaKnown RBP19.06■□□□□ 0.64
PTCD3-220ENST00000627371 HSPA4LO95757 839 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 CHEK2O96017 543 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 FAM87AP0C7U9 286 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 BUD31P41223 144 aaPredicted RBP19.06■□□□□ 0.64
PTCD3-220ENST00000627371 ABCE1P61221 599 aaKnown RBP19.06■□□□□ 0.64
PTCD3-220ENST00000627371 AIMP2Q13155 320 aaKnown RBP19.06■□□□□ 0.64
PTCD3-220ENST00000627371 SLC13A2Q13183 592 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 IMPG1Q17R60 797 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 CCNYL2Q5T2Q4 361 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 APIPQ96GX9 242 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 ACBD3Q9H3P7 528 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 ZNF160Q9HCG1 818 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 TUBD1Q9UJT1 453 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 CLDN16Q9Y5I7 305 aa19.06■□□□□ 0.64
PTCD3-220ENST00000627371 TNRC6AQ8NDV7 1962 aaKnown RBP19.06■□□□□ 0.64
PTCD3-220ENST00000627371 SYNDIG1LA6NDD5 238 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 TMEM233B4DJY2 109 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 MASP2O00187 686 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 ATXN7O15265 892 aaPredicted RBP19.05■□□□□ 0.64
PTCD3-220ENST00000627371 PROM1O43490 865 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 ITM2AO43736 263 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 CTNSO60931 367 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 LYPLA1O75608 230 aaPredicted RBP19.05■□□□□ 0.64
PTCD3-220ENST00000627371 CEACAM4O75871 244 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 RSL1D1O76021 490 aaKnown RBP19.05■□□□□ 0.64
PTCD3-220ENST00000627371 TLX1P31314 330 aaPredicted RBP19.05■□□□□ 0.64
PTCD3-220ENST00000627371 CCL11P51671 97 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 OR4D2P58180 307 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 KCNAB2Q13303 367 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 UGT3A2Q3SY77 523 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 SFT2D3Q587I9 215 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 C18orf63Q68DL7 685 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 LSM14AQ8ND56 463 aaKnown RBP19.05■□□□□ 0.64
PTCD3-220ENST00000627371 AGR3Q8TD06 166 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 TWIST2Q8WVJ9 160 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 C11orf24Q96F05 449 aaPredicted RBP19.05■□□□□ 0.64
PTCD3-220ENST00000627371 WDR77Q9BQA1 342 aaPredicted RBP19.05■□□□□ 0.64
PTCD3-220ENST00000627371 TUBB6Q9BUF5 446 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 TUBB1Q9H4B7 451 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 SIRT5Q9NXA8 310 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 ZDHHC2Q9UIJ5 367 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 MCM8Q9UJA3 840 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 CCL27Q9Y4X3 112 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 CROCCQ5TZA2 2017 aa19.05■□□□□ 0.64
PTCD3-220ENST00000627371 IGHV3-20A0A0C4DH32 117 aa19.04■□□□□ 0.64
PTCD3-220ENST00000627371 A0A1W2PR48 441 aa19.04■□□□□ 0.64
PTCD3-220ENST00000627371 NPIPB8E9PQR5 432 aa19.04■□□□□ 0.64
PTCD3-220ENST00000627371 MKRN2OSH3BPM6 223 aa19.04■□□□□ 0.64
PTCD3-220ENST00000627371 TGFBR3LH3BV60 316 aa19.04■□□□□ 0.64
PTCD3-220ENST00000627371 SLC28A1O00337 649 aa19.04■□□□□ 0.64
PTCD3-220ENST00000627371 NR2F6P10588 404 aa19.04■□□□□ 0.64
PTCD3-220ENST00000627371 PRPH2P23942 346 aa19.04■□□□□ 0.64
PTCD3-220ENST00000627371 ATRXP46100 2492 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms