RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 GSTA1P08263 222 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 KRT15P19012 456 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 TSPAN8P19075 237 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 HSD17B3P37058 310 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 HSD17B7P56937 341 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 HERVK_113P63132 956 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 ZNF169Q14929 603 aaPredicted RBP14.97□□□□□ -0.01
BRCA1-228ENST00000618469 TLR1Q15399 786 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 DEPDC1Q5TB30 811 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 C1QL3Q5VWW1 255 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 TTC19Q6DKK2 380 aaPredicted RBP14.97□□□□□ -0.01
BRCA1-228ENST00000618469 ZNF595Q8IYB9 648 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 OR4F6Q8NGB9 312 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 WDR20Q8TBZ3 569 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 M1APQ8TC57 530 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 TMEM237Q96Q45 408 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 MAPKAP1Q9BPZ7 522 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 NTMT1Q9BV86 223 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 ERVK-6Q9BXR3 956 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 LYRM4Q9HD34 91 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 SPACA6W5XKT8 324 aa14.97□□□□□ -0.01
BRCA1-228ENST00000618469 ANKRD17O75179 2603 aaKnown RBP14.97□□□□□ -0.01
BRCA1-228ENST00000618469 CYR61O00622 381 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 GLRA3O75311 464 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 ETHE1O95571 254 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 DDAH2O95865 285 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 WDPCPO95876 746 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 OTCP00480 354 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 ATP5F1P24539 256 aaPredicted RBP14.96□□□□□ -0.01
BRCA1-228ENST00000618469 PPP2R1BP30154 601 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 NEK2P51955 445 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 CDH13P55290 713 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 TAS2R50P59544 299 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 NR6A1Q15406 480 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 GGTA1PQ4G0N0 100 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 OR4C11Q6IEV9 310 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 TDRPQ86YL5 185 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 CRLF3Q8IUI8 442 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 KIF2BQ8N4N8 673 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 CISD2Q8N5K1 135 aaKnown RBP14.96□□□□□ -0.01
BRCA1-228ENST00000618469 CATSPER1Q8NEC5 780 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 RGMAQ96B86 450 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 SNRNP40Q96DI7 357 aaKnown RBP14.96□□□□□ -0.01
BRCA1-228ENST00000618469 C1QTNF3Q9BXJ4 246 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 PNO1Q9NRX1 252 aaKnown RBP14.96□□□□□ -0.01
BRCA1-228ENST00000618469 FBXW2Q9UKT8 454 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 ABCA12Q86UK0 2595 aa14.96□□□□□ -0.01
BRCA1-228ENST00000618469 CROCCQ5TZA2 2017 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 A0A1B0GTL3 188 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 DLX3O60479 287 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 CDH16O75309 829 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 MYO1DO94832 1006 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 SUPT7LO94864 414 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 LDLRP01130 860 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 CPN2P22792 545 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 PTX3P26022 381 aaPredicted RBP14.95□□□□□ -0.02
BRCA1-228ENST00000618469 TSFMP43897 325 aaKnown RBP14.95□□□□□ -0.02
BRCA1-228ENST00000618469 TNFSF10P50591 281 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 IFT88Q13099 833 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 ZNF678Q5SXM1 525 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 FAM219BQ5XKK7 198 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 FRG2Q64ET8 278 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 LETMD1Q6P1Q0 360 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 MILR1Q7Z6M3 343 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 BEST3Q8N1M1 668 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 SLC5A8Q8N695 610 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 OR2W6PQ8NHA6 318 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 TRPC4APQ8TEL6 797 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 MTFMTQ96DP5 389 aaKnown RBP14.95□□□□□ -0.02
BRCA1-228ENST00000618469 FRG2BQ96QU4 278 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 SLC29A3Q9BZD2 475 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 RNF32Q9H0A6 362 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.95□□□□□ -0.02
BRCA1-228ENST00000618469 ELOVL6Q9H5J4 265 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 ADAP2Q9NPF8 381 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 ASF1BQ9NVP2 202 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 KCMF1Q9P0J7 381 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 ABI3Q9P2A4 366 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 CLDN16Q9Y5I7 305 aa14.95□□□□□ -0.02
BRCA1-228ENST00000618469 TRAV17A0A0B4J275 112 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 OR5H15A6NDH6 313 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 FOXE1O00358 373 aaPredicted RBP14.94□□□□□ -0.02
BRCA1-228ENST00000618469 PPP6CO00743 305 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 MAN1A2O60476 641 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 LDB3O75112 727 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 EEDO75530 441 aaKnown RBP14.94□□□□□ -0.02
BRCA1-228ENST00000618469 ST13P50502 369 aaKnown RBP14.94□□□□□ -0.02
BRCA1-228ENST00000618469 HNRNPH2P55795 449 aaKnown RBP14.94□□□□□ -0.02
BRCA1-228ENST00000618469 TNFRSF17Q02223 184 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 ID2Q02363 134 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 CLCQ05315 142 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 STX4Q12846 297 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 SLAMF1Q13291 335 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 CUL3Q13618 768 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 MEP1AQ16819 746 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 UNC50Q53HI1 259 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 SGO1Q5FBB7 561 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 ACER2Q5QJU3 275 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 H3F3CQ6NXT2 135 aa14.94□□□□□ -0.02
BRCA1-228ENST00000618469 EMBQ6PCB8 327 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms