RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 RPL14P50914 215 aaKnown RBP18.2■□□□□ 0.5
UPF1-209ENST00000600310 BTKQ06187 659 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 ACSM2AQ08AH3 577 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 SPDYAQ5MJ70 313 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 CCNYL2Q5T2Q4 361 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 ACSM2BQ68CK6 577 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 GALNT18Q6P9A2 607 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 TMEM205Q6UW68 189 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 KIRREL2Q6UWL6 708 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 ZNF595Q8IYB9 648 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 FAM47BQ8NA70 645 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 OR2T11Q8NH01 316 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 METTL2AQ96IZ6 378 aaKnown RBP18.2■□□□□ 0.5
UPF1-209ENST00000600310 CCT7Q99832 543 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 PRDM9Q9NQV7 894 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 PRTFDC1Q9NRG1 225 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 P4HTMQ9NXG6 502 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 MRPS33Q9Y291 106 aaKnown RBP18.2■□□□□ 0.5
UPF1-209ENST00000600310 ATG4BQ9Y4P1 393 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 ZFYVE26Q68DK2 2539 aa18.2■□□□□ 0.5
UPF1-209ENST00000600310 LOC102723996A0A087X1L8 192 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 A0A1W2PQ72 361 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 BLACEA4D250 179 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 PEX12O00623 359 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 PROM1O43490 865 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 PRMT3O60678 531 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 C8orf89P0DMQ9 161 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 HNRNPFP52597 415 aaKnown RBP18.19■□□□□ 0.5
UPF1-209ENST00000600310 MAPK12P53778 367 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 HSD17B7P56937 341 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 RAE1P78406 368 aaKnown RBP18.19■□□□□ 0.5
UPF1-209ENST00000600310 BTG2P78543 158 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 OCRLQ01968 901 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 TNFRSF17Q02223 184 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 ATP1A4Q13733 1029 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 XKR7Q5GH72 579 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 SCUBE1Q8IWY4 988 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 DDIASQ8IXT1 998 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 EFCAB3Q8N7B9 438 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 TMEM52Q8NDY8 209 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 DYDC1Q8WWB3 177 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 METTL21AQ8WXB1 218 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 VPS50Q96JG6 964 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 PTCHD1Q96NR3 888 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 PFDN4Q9NQP4 134 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 MCM8Q9UJA3 840 aa18.19■□□□□ 0.5
UPF1-209ENST00000600310 PTPRQQ9UMZ3 2332 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 IGKV3D-11A0A0A0MRZ8 115 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 A0A1W2PR48 441 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 CTNSO60931 367 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 GUCY1B2O75343 617 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 ACPPP15309 386 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 TLX1P31314 330 aaPredicted RBP18.18■□□□□ 0.5
UPF1-209ENST00000600310 TIA1P31483 386 aaKnown RBP eCLIP18.18■□□□□ 0.5
UPF1-209ENST00000600310 BUD31P41223 144 aaPredicted RBP18.18■□□□□ 0.5
UPF1-209ENST00000600310 TRA2BP62995 288 aaKnown RBP18.18■□□□□ 0.5
UPF1-209ENST00000600310 KIAA0040Q15053 153 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 NR6A1Q15406 480 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 NSDHLQ15738 373 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 DEFB109BQ30KR1 87 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 FAAH2Q6GMR7 532 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 FAM76AQ8TAV0 307 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 TSLPQ969D9 159 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 MESP1Q9BRJ9 268 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 LRTM1Q9HBL6 345 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 PNPOQ9NVS9 261 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 C1orf109Q9NX04 203 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 MAN2B2Q9Y2E5 1009 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 CLDN16Q9Y5I7 305 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 CCDC88CQ9P219 2028 aa18.18■□□□□ 0.5
UPF1-209ENST00000600310 LAMA5O15230 3695 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 LSM1O15116 133 aaKnown RBP18.17■□□□□ 0.5
UPF1-209ENST00000600310 PCDH7O60245 1069 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 SKAP2O75563 359 aaPredicted RBP18.17■□□□□ 0.5
UPF1-209ENST00000600310 C18orf63Q68DL7 685 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 ANKRD37Q7Z713 158 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 ARFGAP2Q8N6H7 521 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 OR11G2Q8NGC1 345 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 LRRC8CQ8TDW0 803 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 CKAP2Q8WWK9 683 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 C8orf44Q96CB5 159 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 TM4SF18Q96CE8 201 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 C3orf30Q96M34 536 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 FER1L6-AS2Q96M78 137 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 RPF2Q9H7B2 306 aaKnown RBP18.17■□□□□ 0.5
UPF1-209ENST00000600310 NECTIN3Q9NQS3 549 aa18.17■□□□□ 0.5
UPF1-209ENST00000600310 C19orf25Q9UFG5 118 aaPredicted RBP18.17■□□□□ 0.5
UPF1-209ENST00000600310 SEC22BO75396 215 aa18.16■□□□□ 0.5
UPF1-209ENST00000600310 MYO1DO94832 1006 aa18.16■□□□□ 0.5
UPF1-209ENST00000600310 AIFM1O95831 613 aa18.16■□□□□ 0.5
UPF1-209ENST00000600310 ITGB2P05107 769 aa18.16■□□□□ 0.5
UPF1-209ENST00000600310 NR2F6P10588 404 aa18.16■□□□□ 0.5
UPF1-209ENST00000600310 MAOAP21397 527 aa18.16■□□□□ 0.5
UPF1-209ENST00000600310 GSTM5P46439 218 aa18.16■□□□□ 0.5
UPF1-209ENST00000600310 SLC13A2Q13183 592 aa18.16■□□□□ 0.5
UPF1-209ENST00000600310 PDCD2Q16342 344 aaPredicted RBP18.16■□□□□ 0.5
UPF1-209ENST00000600310 LANCL3Q6ZV70 420 aa18.16■□□□□ 0.5
UPF1-209ENST00000600310 CPEB2Q7Z5Q1 589 aaKnown RBP18.16■□□□□ 0.5
UPF1-209ENST00000600310 TMEM102Q8N9M5 508 aaPredicted RBP18.16■□□□□ 0.5
UPF1-209ENST00000600310 TANKQ92844 425 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms