RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 PTCHD1Q96NR3 888 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 IQCGQ9H095 443 aaKnown RBP18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 GPR83Q9NYM4 423 aa18.29■□□□□ 0.52
SHKBP1-221ENST00000599833 PSMD12O00232 456 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 PROM1O43490 865 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 NPHS1O60500 1241 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 PRKRAO75569 313 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 GBAP04062 536 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 PRR35P0CG20 571 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 HSD3B1P14060 373 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 HSD3B2P26439 372 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 SOX11P35716 441 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 CD97P48960 835 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 RAP1GDS1P52306 607 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 IGLV3-21P80748 117 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 CSTF3Q12996 717 aaKnown RBP18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 LACTB2Q53H82 288 aaPredicted RBP18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 PLAG1Q6DJT9 500 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 IGFL2Q6UWQ7 119 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 ZCCHC23Q6ZST2 131 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 COMMD6Q7Z4G1 85 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 CROCCP2Q86T23 111 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 METTL21AQ8WXB1 218 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 TUBB6Q9BUF5 446 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 SHCBP1LQ9BZQ2 653 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 LHPPQ9H008 270 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 RIC8BQ9NVN3 520 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 FBXW2Q9UKT8 454 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 CCL27Q9Y4X3 112 aa18.28■□□□□ 0.52
SHKBP1-221ENST00000599833 A0A1W2PR48 441 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 WASHC1A8K0Z3 465 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 CTNSO60931 367 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 KRT6AP02538 564 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 KRT6BP04259 564 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 SERPINA7P05543 415 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 ITGAMP11215 1152 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 SERPINB3P29508 390 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 KRT6CP48668 564 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 RAE1P78406 368 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 TNFRSF17Q02223 184 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 ZNF33BQ06732 778 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 UGT3A2Q3SY77 523 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 PAPD4Q6PIY7 484 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 SCIMPQ6UWF3 145 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 GPR180Q86V85 440 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 NUDT13Q86X67 352 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 CHTF18Q8WVB6 975 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 THOC3Q96J01 351 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 CNDP1Q96KN2 507 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 PKNOX2Q96KN3 472 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 NPAS2Q99743 824 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 TRMOQ9BU70 441 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 TUBB1Q9H4B7 451 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 PRTFDC1Q9NRG1 225 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 TEX10Q9NXF1 929 aaPredicted RBP18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 C19orf25Q9UFG5 118 aaPredicted RBP18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 ADAM29Q9UKF5 820 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 PPIEQ9UNP9 301 aaKnown RBP18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 SLC12A4Q9UP95 1085 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 PCDHGB7Q9Y5F8 929 aa18.27■□□□□ 0.52
SHKBP1-221ENST00000599833 H3BQF6 201 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 ULK1O75385 1050 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 FAM58BPP0C7Q3 252 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 ITGA3P26006 1051 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 HMOX2P30519 316 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 SERPINB4P48594 390 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 GPR143P51810 404 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 OR4D2P58180 307 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 HMGCS1Q01581 520 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 CFAP157Q5JU67 520 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 VWA5B1Q5TIE3 1220 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 KANK2Q63ZY3 851 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 CLEC6AQ6EIG7 209 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 H3F3CQ6NXT2 135 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 IGFL3Q6UXB1 125 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 RNF165Q6ZSG1 346 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 ASB18Q6ZVZ8 466 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 TRIM46Q7Z4K8 759 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 CUZD1Q86UP6 607 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 KBTBD2Q8IY47 623 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 RBMXL3Q8N7X1 1067 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 ARL8AQ96BM9 186 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 APIPQ96GX9 242 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 CENPHQ9H3R5 247 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 LYARQ9NX58 379 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 VPS29Q9UBQ0 182 aa18.26■□□□□ 0.51
SHKBP1-221ENST00000599833 A0A1W2PS29 197 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 SAGE2PA6NJ88 616 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 NPIPB8E9PQR5 432 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 TM9SF1O15321 606 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 FGF17O60258 216 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 LDB3O75112 727 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 AIFM1O95831 613 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 KLK1P06870 262 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 CPN2P22792 545 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 PGDP52209 483 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 WDR4P57081 412 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 SLC26A5P58743 744 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 NFATC3Q12968 1075 aa18.25■□□□□ 0.51
SHKBP1-221ENST00000599833 RCN2Q14257 317 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms