RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 TSC22D4Q9Y3Q8 395 aa10.42□□□□□ -0.74
LIG1-211ENST00000596457 MED13Q9UHV7 2174 aa10.42□□□□□ -0.74
LIG1-211ENST00000596457 MGAQ8IWI9 3026 aa10.42□□□□□ -0.74
LIG1-211ENST00000596457 LOC102723996A0A087X1L8 192 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 UBFD1O14562 309 aaKnown RBP10.41□□□□□ -0.74
LIG1-211ENST00000596457 SLC28A2O43868 658 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 LDB3O75112 727 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 ULK1O75385 1050 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 PRKRAO75569 313 aaKnown RBP10.41□□□□□ -0.74
LIG1-211ENST00000596457 PDGFAP04085 211 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 IFNA16P05015 189 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 KLK1P06870 262 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 NEFHP12036 1026 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 CHN1P15882 459 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 BSGP35613 385 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 HTR6P50406 440 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 FOXA1P55317 472 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 NAA20P61599 178 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 ID2Q02363 134 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 STX4Q12846 297 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 CUL3Q13618 768 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 CASP8Q14790 479 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 TCTN3Q6NUS6 607 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 PAPD4Q6PIY7 484 aaKnown RBP10.41□□□□□ -0.74
LIG1-211ENST00000596457 ATG14Q6ZNE5 492 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 QSOX2Q6ZRP7 698 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 FRMD7Q6ZUT3 714 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 NUDT13Q86X67 352 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 OR4N5Q8IXE1 308 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 SIRT6Q8N6T7 355 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 ANKRD42Q8N9B4 389 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 PPP1R14CQ8TAE6 165 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 ADAMTS18Q8TE60 1221 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 PKNOX2Q96KN3 472 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 TUBB6Q9BUF5 446 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 SLC29A3Q9BZD2 475 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 LHPPQ9H008 270 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 LYRM4Q9HD34 91 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 ARGLU1Q9NWB6 273 aaPredicted RBP10.41□□□□□ -0.74
LIG1-211ENST00000596457 PSD3Q9NYI0 1048 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 KCMF1Q9P0J7 381 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 ZNF451Q9Y4E5 1061 aa10.41□□□□□ -0.74
LIG1-211ENST00000596457 GLOD5A6NK44 160 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 A8MUI8 341 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 CYR61O00622 381 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 PCDH17O14917 1159 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 SUV39H1O43463 412 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 TYROBPO43914 113 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 CEACAM4O75871 244 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 ESRRBO95718 433 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 ENO1P06733 434 aaKnown RBP10.4□□□□□ -0.74
LIG1-211ENST00000596457 FAM58BPP0C7Q3 252 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 PRR35P0CG20 571 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 ITGAMP11215 1152 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 TNNI3P19429 210 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 TLX1P31314 330 aaPredicted RBP10.4□□□□□ -0.74
LIG1-211ENST00000596457 HNRNPH2P55795 449 aaKnown RBP10.4□□□□□ -0.74
LIG1-211ENST00000596457 MYBPC3Q14896 1274 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 IMPG1Q17R60 797 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 SPDYAQ5MJ70 313 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 CCNYL2Q5T2Q4 361 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 C18orf63Q68DL7 685 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 CLEC6AQ6EIG7 209 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 LINC00696Q6ZRV3 163 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 PAGE2Q7Z2X7 111 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 GPR180Q86V85 440 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 NUDCD3Q8IVD9 361 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 ZNF595Q8IYB9 648 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 TEX19Q8NA77 164 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 AGR3Q8TD06 166 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 BRIX1Q8TDN6 353 aaKnown RBP10.4□□□□□ -0.74
LIG1-211ENST00000596457 PGM2Q96G03 612 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 CNDP1Q96KN2 507 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 LPAR4Q99677 370 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 STMN4Q9H169 189 aaPredicted RBP10.4□□□□□ -0.74
LIG1-211ENST00000596457 ZNF552Q9H707 407 aaPredicted RBP10.4□□□□□ -0.74
LIG1-211ENST00000596457 KCNK13Q9HB14 408 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 MLXIPLQ9NP71 852 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 NMRK1Q9NWW6 199 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 LYARQ9NX58 379 aaKnown RBP10.4□□□□□ -0.74
LIG1-211ENST00000596457 PTGFRNQ9P2B2 879 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 VPS29Q9UBQ0 182 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 PHF11Q9UIL8 331 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 ANAPC2Q9UJX6 822 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 ATG4BQ9Y4P1 393 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 MMACHCQ9Y4U1 282 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 PCDHGA9Q9Y5G4 932 aaKnown RBP10.4□□□□□ -0.74
LIG1-211ENST00000596457 ABCA12Q86UK0 2595 aa10.4□□□□□ -0.74
LIG1-211ENST00000596457 A0A0A6YYD5 115 aa10.39□□□□□ -0.75
LIG1-211ENST00000596457 TGFBR3LH3BV60 316 aa10.39□□□□□ -0.75
LIG1-211ENST00000596457 TMPRSS11DO60235 418 aa10.39□□□□□ -0.75
LIG1-211ENST00000596457 KLHL41O60662 606 aa10.39□□□□□ -0.75
LIG1-211ENST00000596457 CTNSO60931 367 aa10.39□□□□□ -0.75
LIG1-211ENST00000596457 ALPPP05187 535 aa10.39□□□□□ -0.75
LIG1-211ENST00000596457 BPGMP07738 259 aa10.39□□□□□ -0.75
LIG1-211ENST00000596457 CYC1P08574 325 aa10.39□□□□□ -0.75
LIG1-211ENST00000596457 ICAM2P13598 275 aa10.39□□□□□ -0.75
LIG1-211ENST00000596457 PPP2R1BP30154 601 aa10.39□□□□□ -0.75
LIG1-211ENST00000596457 BUD31P41223 144 aaPredicted RBP10.39□□□□□ -0.75
LIG1-211ENST00000596457 TSFMP43897 325 aaKnown RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms