RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	PRTFDC1	Q9NRG1	225 aa		12.45	□□□□□ -0.42
SREBF1-223	ENST00000584760	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	12.45	□□□□□ -0.42
SREBF1-223	ENST00000584760	ADGRE2	Q9UHX3	823 aa		12.45	□□□□□ -0.42
SREBF1-223	ENST00000584760	MRPS33	Q9Y291	106 aa	Known RBP	12.45	□□□□□ -0.42
SREBF1-223	ENST00000584760	RNF11	Q9Y3C5	154 aa		12.45	□□□□□ -0.42
SREBF1-223	ENST00000584760	PCDHGA11	Q9Y5H2	935 aa		12.45	□□□□□ -0.42
SREBF1-223	ENST00000584760		A8MT66	165 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	SAP18	O00422	153 aa	Known RBP	12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	PLPP1	O14494	284 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	SH3BGRL	O75368	114 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	PPP2R1B	P30154	601 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	SSR2	P43308	183 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	RPS13	P62277	151 aa	Known RBP	12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	SLC13A2	Q13183	592 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	RCN2	Q14257	317 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	INA	Q16352	499 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	CPSF6	Q16630	551 aa	Known RBP eCLIP	12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	DEPDC1	Q5TB30	811 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	CHSY3	Q70JA7	882 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	LCA5	Q86VQ0	697 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	SLC5A8	Q8N695	610 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	OR1N1	Q8NGS0	311 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	GRHL3	Q8TE85	626 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	REPS1	Q96D71	796 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	ZNF354B	Q96LW1	612 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	MAGEB10	Q96LZ2	347 aa	Predicted RBP	12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	CDK15	Q96Q40	435 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	MAPKAP1	Q9BPZ7	522 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	SORBS1	Q9BX66	1292 aa	Known RBP	12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	C1QTNF3	Q9BXJ4	246 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	AGPAT4	Q9NRZ5	378 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	STMN3	Q9NZ72	180 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	PPIE	Q9UNP9	301 aa	Known RBP	12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	ENTPD4	Q9Y227	616 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	OSGIN2	Q9Y236	505 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	POLE	Q07864	2286 aa		12.44	□□□□□ -0.42
SREBF1-223	ENST00000584760	IQANK1	A0A1B0GTG1	560 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	CLDN4	O14493	209 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	MYO1D	O94832	1006 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	CLDN9	O95484	217 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	ETHE1	O95571	254 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	CCNG1	P51959	295 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	ARFIP1	P53367	373 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	PER3	P56645	1201 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	TAS2R50	P59544	299 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	TUBA3C	Q13748	450 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	ZRSR2	Q15696	482 aa	Known RBP	12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	MEP1A	Q16819	746 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	AP5B1	Q2VPB7	878 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	GGTA1P	Q4G0N0	100 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	TUBA3E	Q6PEY2	450 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	FAM180A	Q6UWF9	173 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	CLNK	Q7Z7G1	428 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	ARMC10	Q8N2F6	343 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	ZCCHC7	Q8N3Z6	543 aa	Known RBP	12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	APCDD1L	Q8NCL9	501 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	ST6GALNAC3	Q8NDV1	305 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	MDS2	Q8NDY4	140 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	B3GNT7	Q8NFL0	401 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	ACMSD	Q8TDX5	336 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	ZNF483	Q8TF39	744 aa	Predicted RBP	12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	TAAR6	Q96RI8	345 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	SLX1A	Q9BQ83	275 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	NTMT1	Q9BV86	223 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	12.43	□□□□□ -0.42	3e-9	■■■■■ 35.2
SREBF1-223	ENST00000584760	ANKZF1	Q9H8Y5	726 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	ADAP2	Q9NPF8	381 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	TMEM216	Q9P0N5	145 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760	PPT2	Q9UMR5	302 aa		12.43	□□□□□ -0.42
SREBF1-223	ENST00000584760		A0A1B0GTL3	188 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	SYNDIG1L	A6NDD5	238 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	GABRR3	A8MPY1	467 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760		A8MUA0	341 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	FOXE1	O00358	373 aa	Predicted RBP	12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	PRAMEF2	O60811	474 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	ZG16	O60844	167 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	CTNS	O60931	367 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	SHBG	P04278	402 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	GRN	P28799	593 aa	Known RBP	12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	GPR143	P51810	404 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	NEK2	P51955	445 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	RAP1GDS1	P52306	607 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	HNRNPH2	P55795	449 aa	Known RBP	12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	PHEX	P78562	749 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	CUL3	Q13618	768 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	ELAVL1	Q15717	326 aa	Known RBP	12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	ZNF324B	Q6AW86	544 aa	Predicted RBP	12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	OR4C11	Q6IEV9	310 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	RPS27L	Q71UM5	84 aa	Known RBP	12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	RPS19BP1	Q86WX3	136 aa	Known RBP	12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	MCEMP1	Q8IX19	187 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	CNPY4	Q8N129	248 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	FAR1	Q8WVX9	515 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	RGMA	Q96B86	450 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	SIGLEC12	Q96PQ1	595 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	CENPK	Q9BS16	269 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	SEMA4B	Q9NPR2	832 aa	Predicted RBP	12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	PNO1	Q9NRX1	252 aa	Known RBP	12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	PSD3	Q9NYI0	1048 aa		12.42	□□□□□ -0.42
SREBF1-223	ENST00000584760	ABI3	Q9P2A4	366 aa		12.42	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms